Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CV727_RS07485 | Genome accession | NZ_CP024949 |
| Coordinates | 1518702..1519838 (-) | Length | 378 a.a. |
| NCBI ID | WP_145821308.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B136A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1513702..1524838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV727_RS08580 | - | 1514315..1514473 (+) | 159 | WP_161594750.1 | hypothetical protein | - |
| CV727_RS07470 (CV727_07465) | - | 1515120..1516052 (-) | 933 | WP_145821303.1 | GDP-L-fucose synthase | - |
| CV727_RS07475 (CV727_07470) | gmd | 1516045..1517190 (-) | 1146 | WP_145821305.1 | GDP-mannose 4,6-dehydratase | - |
| CV727_RS07480 (CV727_07475) | - | 1517219..1518631 (-) | 1413 | WP_145821307.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CV727_RS07485 (CV727_07480) | comB10 | 1518702..1519838 (-) | 1137 | WP_145821308.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CV727_RS07490 (CV727_07485) | comB9 | 1519831..1520811 (-) | 981 | WP_145821310.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CV727_RS07495 (CV727_07490) | comB8 | 1520811..1521554 (-) | 744 | WP_000660569.1 | virB8 family protein | Machinery gene |
| CV727_RS07500 (CV727_07495) | comB7 | 1521551..1521664 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CV727_RS07505 (CV727_07500) | comB6 | 1521680..1522735 (-) | 1056 | WP_145821557.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CV727_RS07510 (CV727_07505) | - | 1522743..1523747 (-) | 1005 | WP_145821312.1 | PDZ domain-containing protein | - |
| CV727_RS07515 (CV727_07510) | - | 1523747..1524049 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CV727_RS07520 (CV727_07515) | panD | 1524052..1524405 (-) | 354 | WP_108338030.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42193.79 Da Isoelectric Point: 9.9021
>NTDB_id=256602 CV727_RS07485 WP_145821308.1 1518702..1519838(-) (comB10) [Helicobacter pylori strain B136A]
MNKWLKGVLVFVGGFATITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK
MNKWLKGVLVFVGGFATITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=256602 CV727_RS07485 WP_145821308.1 1518702..1519838(-) (comB10) [Helicobacter pylori strain B136A]
ATGAATAAATGGCTTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATATTCTTTCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAATGGCTTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATATTCTTTCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.354 |
100 |
0.974 |