Detailed information NTG0256606

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: CV727_RS07505
• Genome accession: NZ_CP024949
• Coordinates: 1521680..1522735 (-)
• Length: 351 a.a.
• NCBI ID: WP_145821557.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B136A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1516680..1527735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV727_RS07480 (CV727_07475)	-	1517219..1518631 (-)	1413	WP_145821307.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV727_RS07485 (CV727_07480)	comB10	1518702..1519838 (-)	1137	WP_145821308.1	DNA type IV secretion system protein ComB10	Machinery gene
CV727_RS07490 (CV727_07485)	comB9	1519831..1520811 (-)	981	WP_145821310.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV727_RS07495 (CV727_07490)	comB8	1520811..1521554 (-)	744	WP_000660569.1	virB8 family protein	Machinery gene
CV727_RS07500 (CV727_07495)	comB7	1521551..1521664 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV727_RS07505 (CV727_07500)	comB6	1521680..1522735 (-)	1056	WP_145821557.1	P-type conjugative transfer protein TrbL	Machinery gene
CV727_RS07510 (CV727_07505)	-	1522743..1523747 (-)	1005	WP_145821312.1	PDZ domain-containing protein	-
CV727_RS07515 (CV727_07510)	-	1523747..1524049 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
CV727_RS07520 (CV727_07515)	panD	1524052..1524405 (-)	354	WP_108338030.1	aspartate 1-decarboxylase	-
CV727_RS07525 (CV727_07520)	-	1524395..1526620 (-)	2226	WP_145821314.1	ATP-dependent Clp protease ATP-binding subunit	-
CV727_RS07530 (CV727_07525)	-	1526620..1526895 (-)	276	WP_145821559.1	ATP-dependent Clp protease adaptor ClpS	-
CV727_RS07535 (CV727_07530)	-	1526916..1527329 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39847.80 Da
• Isoelectric Point: 8.3315

>NTDB_id=256606 CV727_RS07505 WP_145821557.1 1521680..1522735(-) (comB6) [Helicobacter pylori strain B136A]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=256606 CV727_RS07505 WP_145821557.1 1521680..1522735(-) (comB6) [Helicobacter pylori strain B136A]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTCCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATTA
CTACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAACGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAACGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983