Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CV730_RS00980 | Genome accession | NZ_CP024946 |
| Coordinates | 199793..200923 (+) | Length | 376 a.a. |
| NCBI ID | WP_145728140.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B147 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 194793..205923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV730_RS00945 (CV730_00940) | panD | 195244..195588 (+) | 345 | WP_145728138.1 | aspartate 1-decarboxylase | - |
| CV730_RS00950 (CV730_00945) | - | 195600..195893 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CV730_RS00955 (CV730_00950) | - | 195893..196888 (+) | 996 | WP_145729126.1 | PDZ domain-containing protein | - |
| CV730_RS00960 (CV730_00955) | comB6 | 196896..197951 (+) | 1056 | WP_145729124.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CV730_RS00965 (CV730_00960) | comB7 | 197967..198080 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CV730_RS00970 (CV730_00965) | comB8 | 198077..198820 (+) | 744 | WP_120832951.1 | virB8 family protein | Machinery gene |
| CV730_RS00975 (CV730_00970) | comB9 | 198820..199800 (+) | 981 | WP_145728139.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CV730_RS00980 (CV730_00975) | comB10 | 199793..200923 (+) | 1131 | WP_145728140.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CV730_RS00985 (CV730_00980) | - | 200993..202411 (+) | 1419 | WP_145728141.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CV730_RS00990 (CV730_00985) | gmd | 202421..203566 (+) | 1146 | WP_145728142.1 | GDP-mannose 4,6-dehydratase | - |
| CV730_RS00995 (CV730_00990) | - | 203559..204491 (+) | 933 | WP_145728143.1 | GDP-L-fucose synthase | - |
| CV730_RS01005 (CV730_01000) | - | 204885..205244 (-) | 360 | WP_227979687.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41961.53 Da Isoelectric Point: 9.8290
>NTDB_id=256537 CV730_RS00980 WP_145728140.1 199793..200923(+) (comB10) [Helicobacter pylori strain B147]
MNKWLKGAIVFVGCFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSHPIDPKTTPPKKDFSPKQLDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGCFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSHPIDPKTTPPKKDFSPKQLDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=256537 CV730_RS00980 WP_145728140.1 199793..200923(+) (comB10) [Helicobacter pylori strain B147]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGTGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACCAGCCATCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAGGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTGATGAGA
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGTGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACCAGCCATCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAGGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTGATGAGA
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.606 |
100 |
0.976 |