Detailed information NTG0256536

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CV730_RS00975
• Genome accession: NZ_CP024946
• Coordinates: 198820..199800 (+)
• Length: 326 a.a.
• NCBI ID: WP_145728139.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B147
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 193820..204800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV730_RS00945 (CV730_00940)	panD	195244..195588 (+)	345	WP_145728138.1	aspartate 1-decarboxylase	-
CV730_RS00950 (CV730_00945)	-	195600..195893 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
CV730_RS00955 (CV730_00950)	-	195893..196888 (+)	996	WP_145729126.1	PDZ domain-containing protein	-
CV730_RS00960 (CV730_00955)	comB6	196896..197951 (+)	1056	WP_145729124.1	P-type conjugative transfer protein TrbL	Machinery gene
CV730_RS00965 (CV730_00960)	comB7	197967..198080 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV730_RS00970 (CV730_00965)	comB8	198077..198820 (+)	744	WP_120832951.1	virB8 family protein	Machinery gene
CV730_RS00975 (CV730_00970)	comB9	198820..199800 (+)	981	WP_145728139.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV730_RS00980 (CV730_00975)	comB10	199793..200923 (+)	1131	WP_145728140.1	DNA type IV secretion system protein ComB10	Machinery gene
CV730_RS00985 (CV730_00980)	-	200993..202411 (+)	1419	WP_145728141.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV730_RS00990 (CV730_00985)	gmd	202421..203566 (+)	1146	WP_145728142.1	GDP-mannose 4,6-dehydratase	-
CV730_RS00995 (CV730_00990)	-	203559..204491 (+)	933	WP_145728143.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37536.33 Da
• Isoelectric Point: 9.5485

>NTDB_id=256536 CV730_RS00975 WP_145728139.1 198820..199800(+) (comB9) [Helicobacter pylori strain B147]
MRKFLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENMAENAPKDAPINNKPLKEEKEEAKEKEEEAIIIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGI
CSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRFV
KKGKDE

Nucleotide

• Length: 981 bp

>NTDB_id=256536 CV730_RS00975 WP_145728139.1 198820..199800(+) (comB9) [Helicobacter pylori strain B147]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCAAAAATTTTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGGCTATAATTATTGGCGATAACACTAACGCAA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATT
TGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTC
AAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.706	100	0.957