Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MFLA_RS01105 Genome accession   NC_007947
Coordinates   226248..227615 (-) Length   455 a.a.
NCBI ID   WP_011478582.1    Uniprot ID   Q1H4V2
Organism   Methylobacillus flagellatus KT     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 221248..232615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFLA_RS01090 (Mfla_0211) - 221384..224464 (-) 3081 WP_011478579.1 efflux RND transporter permease subunit -
  MFLA_RS01095 (Mfla_0212) - 224461..225453 (-) 993 WP_229407093.1 efflux RND transporter periplasmic adaptor subunit -
  MFLA_RS01100 (Mfla_0213) ampD 225657..226241 (-) 585 WP_011478581.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MFLA_RS01105 (Mfla_0214) pilR 226248..227615 (-) 1368 WP_011478582.1 sigma-54-dependent transcriptional regulator Regulator
  MFLA_RS01110 (Mfla_0215) - 227612..229207 (-) 1596 WP_011478583.1 sensor histidine kinase -
  MFLA_RS01115 - 229204..229422 (-) 219 WP_048811797.1 PP0621 family protein -
  MFLA_RS01120 (Mfla_0217) - 229570..230160 (+) 591 WP_011478585.1 RNA polymerase sigma factor -
  MFLA_RS14245 (Mfla_0218) - 230157..230525 (+) 369 WP_011478586.1 DUF3619 family protein -
  MFLA_RS01130 (Mfla_0219) - 230507..230941 (+) 435 WP_011478587.1 DUF3106 domain-containing protein -
  MFLA_RS01135 (Mfla_0220) lptG 230987..232057 (-) 1071 WP_011478588.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49725.06 Da        Isoelectric Point: 6.2433

>NTDB_id=25647 MFLA_RS01105 WP_011478582.1 226248..227615(-) (pilR) [Methylobacillus flagellatus KT]
MSAFPACLVVDDETDIRELLVLTLERMDIRADSASSLSEAMHLLKKGQYGLCLTDMRLPDGSGLDLVNRIAQDYPGLPVA
VITAYGSAENAVSALKAGAFDYLTKPISLKQLRPLVQSALKLSAADKANASEDTGALKLIGNSPAIQHVRSMIEKLSRSQ
APVYISGESGSGKELAARLIHQHSSRRDGPFIAVNCGAIPENLMESEFFGHKKGAFTGAIQDKEGMFHAAKGGTLFLDEV
ADLPLAMQVKLLRAIQEKKVRMVGGTQEESVDVRIISATHKNLSVLMERGEFRQDLYYRLNVIELKLPALRDMPEDIPML
VDALLAKQCREQNRPIPTLSPEASHMLARHSFPGNVRELENVLERALALCDGNTITVDDLLLDQDASAHAPSARSAPEDE
GLPLPDYLEHIEKTAILNALEKTQHNKTAAAKLLGVSFRTFRYRLSKLGLSKDTD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=25647 MFLA_RS01105 WP_011478582.1 226248..227615(-) (pilR) [Methylobacillus flagellatus KT]
ATGAGTGCCTTCCCCGCCTGTCTGGTCGTCGATGACGAAACCGATATCCGCGAACTCCTGGTGCTGACCCTGGAGCGCAT
GGACATCCGTGCGGATAGCGCGAGCAGCCTATCTGAGGCTATGCACCTGCTGAAAAAAGGGCAATATGGCTTATGTCTCA
CTGACATGCGATTACCGGATGGCAGCGGGTTGGACCTGGTCAATCGCATTGCCCAGGACTATCCCGGCCTGCCGGTTGCC
GTCATTACCGCCTACGGCAGTGCGGAGAATGCCGTATCCGCGCTCAAAGCTGGCGCCTTCGACTACCTCACCAAGCCCAT
TTCGCTCAAGCAATTGCGCCCCCTGGTGCAATCCGCGCTCAAGCTGTCCGCCGCAGACAAGGCAAATGCATCCGAAGACA
CGGGCGCCCTGAAGCTTATCGGCAACAGCCCCGCCATCCAGCATGTGCGGAGCATGATAGAAAAACTGTCGCGCAGCCAG
GCGCCAGTCTATATCAGTGGCGAATCCGGCAGTGGCAAGGAGTTGGCGGCCCGACTGATCCATCAGCACAGCTCGCGCCG
CGACGGTCCCTTCATTGCCGTCAACTGCGGCGCCATTCCGGAAAATCTCATGGAGAGCGAATTTTTTGGCCACAAGAAAG
GGGCATTTACCGGTGCAATTCAGGATAAGGAGGGCATGTTCCATGCCGCCAAGGGCGGCACCCTTTTCCTGGATGAGGTC
GCCGACCTGCCGCTTGCCATGCAGGTCAAGCTGTTGCGCGCCATTCAGGAAAAAAAGGTGCGCATGGTTGGGGGCACCCA
GGAAGAAAGCGTGGATGTGCGCATCATCAGCGCCACCCATAAAAACCTGTCCGTTCTCATGGAGCGTGGCGAGTTCCGCC
AGGATCTTTATTACCGCCTCAATGTAATAGAACTCAAGCTGCCTGCCCTGCGCGACATGCCGGAAGACATTCCCATGCTG
GTGGATGCCTTGCTAGCCAAGCAGTGCCGGGAGCAGAATCGCCCCATCCCCACATTATCCCCTGAAGCAAGCCACATGCT
GGCAAGGCATAGCTTCCCAGGCAATGTGCGTGAACTGGAAAACGTCTTGGAACGGGCCCTGGCATTATGCGACGGCAACA
CCATCACCGTCGATGACCTTCTGCTGGACCAGGATGCCAGCGCTCACGCGCCCTCTGCCCGATCAGCCCCGGAAGACGAA
GGCCTGCCATTGCCTGACTACCTAGAACATATCGAAAAAACTGCCATTCTCAATGCCCTGGAAAAAACCCAGCATAACAA
GACAGCCGCCGCCAAGCTATTGGGCGTCAGTTTCCGCACCTTTCGCTACCGCCTCAGCAAGCTGGGCCTGAGCAAGGATA
CGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1H4V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.559

97.582

0.571
  pilR Acinetobacter baumannii strain A118

49.573

100

0.51
  luxO Vibrio cholerae strain A1552

37.778

98.901

0.374

Multiple sequence alignment