Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CVS42_RS19890 | Genome accession | NZ_CP024933 |
| Coordinates | 4279884..4280471 (+) | Length | 195 a.a. |
| NCBI ID | WP_005340181.1 | Uniprot ID | A0A165S798 |
| Organism | Aeromonas veronii strain X12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4274884..4285471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVS42_RS19880 (CVS42_19890) | - | 4274901..4276574 (-) | 1674 | WP_100646968.1 | diguanylate cyclase | - |
| CVS42_RS19885 (CVS42_19895) | uvrA | 4276696..4279524 (-) | 2829 | WP_100646969.1 | excinuclease ABC subunit UvrA | - |
| CVS42_RS19890 (CVS42_19900) | ssb | 4279884..4280471 (+) | 588 | WP_005340181.1 | single-stranded DNA-binding protein | Machinery gene |
| CVS42_RS19895 (CVS42_19905) | - | 4280621..4281364 (+) | 744 | WP_100646970.1 | ABC transporter substrate-binding protein | - |
| CVS42_RS22665 (CVS42_19910) | - | 4281437..4281562 (-) | 126 | WP_019445191.1 | hypothetical protein | - |
| CVS42_RS19905 (CVS42_19915) | - | 4282024..4282926 (+) | 903 | WP_100646971.1 | cation diffusion facilitator family transporter | - |
| CVS42_RS19910 (CVS42_19920) | yjbD | 4283073..4283357 (+) | 285 | WP_005340165.1 | DUF3811 domain-containing protein | - |
| CVS42_RS19915 (CVS42_19925) | cspA | 4283952..4284164 (+) | 213 | WP_005316548.1 | RNA chaperone/antiterminator CspA | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21583.11 Da Isoelectric Point: 5.9301
>NTDB_id=256463 CVS42_RS19890 WP_005340181.1 4279884..4280471(+) (ssb) [Aeromonas veronii strain X12]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 588 bp
>NTDB_id=256463 CVS42_RS19890 WP_005340181.1 4279884..4280471(+) (ssb) [Aeromonas veronii strain X12]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAAAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAACCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAAAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAACCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.347 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
53.886 |
98.974 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
46.597 |
97.949 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
46.842 |
97.436 |
0.456 |