Detailed information NTG0256459

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CVS42_RS18735
• Genome accession: NZ_CP024933
• Coordinates: 4058624..4059496 (+)
• Length: 290 a.a.
• NCBI ID: WP_100646866.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain X12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4053624..4064496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVS42_RS18710 (CVS42_18720)	nadC	4053806..4054669 (+)	864	WP_040068931.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CVS42_RS22720 (CVS42_18730)	-	4054985..4055371 (+)	387	WP_100646864.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CVS42_RS18725 (CVS42_18735)	pilB	4055374..4057080 (+)	1707	WP_005356616.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
CVS42_RS18730 (CVS42_18740)	pilC	4057321..4058562 (+)	1242	WP_100646865.1	type II secretion system F family protein	Machinery gene
CVS42_RS18735 (CVS42_18745)	pilD	4058624..4059496 (+)	873	WP_100646866.1	A24 family peptidase	Machinery gene
CVS42_RS18740 (CVS42_18750)	coaE	4059510..4060124 (+)	615	WP_100646867.1	dephospho-CoA kinase	-
CVS42_RS18745 (CVS42_18755)	zapD	4060162..4060884 (+)	723	WP_021231281.1	cell division protein ZapD	-
CVS42_RS18750 (CVS42_18760)	yacG	4060894..4061088 (+)	195	WP_100646869.1	DNA gyrase inhibitor YacG	-
CVS42_RS18755 (CVS42_18765)	mutT	4061166..4061570 (-)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
CVS42_RS18760 (CVS42_18770)	secA	4061645..4064365 (-)	2721	WP_005336144.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31988.28 Da
• Isoelectric Point: 6.5960

>NTDB_id=256459 CVS42_RS18735 WP_100646866.1 4058624..4059496(+) (pilD) [Aeromonas veronii strain X12]
MTLLLELAHSLPLLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFAPDEEAAAPERYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=256459 CVS42_RS18735 WP_100646866.1 4058624..4059496(+) (pilD) [Aeromonas veronii strain X12]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTTGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCACGGCTACTTTG
CCCCCGATGAGGAGGCCGCTGCGCCAGAGCGCTACAACCTGATGGTTCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCAATGGTCATAACGCCGGGCTGGGGGA
CGCTGGCCGCCCTATTGCTGACCTGGGTGCTGGTCGCCCTTACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCTTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAACCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTACTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.79	98.621	0.59
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	53.237	95.862	0.51
pilD	Acinetobacter nosocomialis M2	53.237	95.862	0.51
pilD	Neisseria gonorrhoeae MS11	49.275	95.172	0.469