Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CVE41_RS04710 Genome accession   NZ_CP024920
Coordinates   977004..977534 (-) Length   176 a.a.
NCBI ID   WP_100259610.1    Uniprot ID   -
Organism   Qipengyuania seohaensis strain SW-135     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 972004..982534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVE41_RS04675 - 972161..972937 (+) 777 WP_100259604.1 hypothetical protein -
  CVE41_RS04680 - 972945..973352 (-) 408 WP_232725795.1 ACT domain-containing protein -
  CVE41_RS04685 hslU 973349..974647 (-) 1299 WP_100259605.1 ATP-dependent protease ATPase subunit HslU -
  CVE41_RS04690 hslV 974656..975216 (-) 561 WP_100259606.1 ATP-dependent protease subunit HslV -
  CVE41_RS04695 - 975256..975726 (-) 471 WP_100259607.1 outer membrane protein assembly factor BamE -
  CVE41_RS04700 - 975901..976419 (+) 519 WP_100259608.1 ubiquinol-cytochrome C chaperone family protein -
  CVE41_RS04705 - 976416..976943 (+) 528 WP_100259609.1 DUF177 domain-containing protein -
  CVE41_RS04710 ssb 977004..977534 (-) 531 WP_100259610.1 single-stranded DNA-binding protein Machinery gene
  CVE41_RS04715 - 977624..979471 (-) 1848 WP_100259611.1 ferrous iron transporter B -
  CVE41_RS04720 - 979468..979707 (-) 240 WP_100259612.1 FeoA family protein -
  CVE41_RS04725 - 979761..980435 (-) 675 WP_100259613.1 COQ9 family protein -
  CVE41_RS04730 - 980435..981046 (-) 612 WP_232725796.1 ankyrin repeat domain-containing protein -
  CVE41_RS04735 - 981119..981715 (+) 597 WP_100259614.1 SCO family protein -
  CVE41_RS04740 - 981703..982161 (+) 459 WP_100259615.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18505.01 Da        Isoelectric Point: 4.7981

>NTDB_id=256416 CVE41_RS04710 WP_100259610.1 977004..977534(-) (ssb) [Qipengyuania seohaensis strain SW-135]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSETWKDRNTGERQERTEWHTVAIFSEGLIGVVERFLRKGSKVYI
EGQLQTRKWQDQSGNDRYSTEIVLRGLNGTLTMLDGAQGGNRGGGGGGSSWDQGGDQSSGGGDNWRSGGGSSGGGSQGGS
SGGGSNYDDLDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=256416 CVE41_RS04710 WP_100259610.1 977004..977534(-) (ssb) [Qipengyuania seohaensis strain SW-135]
ATGGCAGGTAGCCTCAACAAAGTCATGCTGATCGGTAATCTGGGCGCAGACCCGGAAATCCGCAGCTTCCAGAACGGCGG
TAAGGTCGCCAACCTACGCATCGCCACCAGCGAGACGTGGAAGGACCGCAACACCGGCGAACGCCAGGAACGCACCGAAT
GGCACACCGTCGCGATCTTCTCCGAAGGCCTGATCGGCGTGGTCGAGCGTTTTCTGCGCAAGGGTTCGAAGGTTTACATC
GAAGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGAGCGGCAACGACCGTTACTCGACCGAAATCGTCCTACGCGGCCT
CAATGGCACGCTGACCATGCTGGACGGTGCCCAAGGCGGTAATCGCGGCGGCGGCGGCGGCGGTTCCAGTTGGGACCAGG
GCGGCGACCAGTCTTCGGGCGGCGGCGACAATTGGCGCAGTGGCGGCGGTTCGTCGGGCGGTGGCTCGCAGGGCGGCAGC
TCGGGCGGCGGATCGAACTACGACGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

98.295

0.494
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.483
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.392
  ssb Neisseria meningitidis MC58

37.778

100

0.386

Multiple sequence alignment