NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	CSB78_RS12785	Genome accession	NZ_CP029671
Coordinates	2477281..2477967 (+)	Length	228 a.a.
NCBI ID	WP_000692871.1	Uniprot ID	-
Organism	Staphylococcus aureus strain AR_0222
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2472281..2482967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB78_RS12765 (CSB78_2299)	-	2472393..2475023 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
CSB78_RS12770 (CSB78_2300)	-	2475036..2476307 (+)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CSB78_RS12780 (CSB78_2301)	-	2476577..2477284 (+)	708	WP_000261115.1	A24 family peptidase	-
CSB78_RS12785 (CSB78_2302)	ysxA/radC	2477281..2477967 (+)	687	WP_000692871.1	DNA repair protein RadC	Machinery gene
CSB78_RS12790 (CSB78_2303)	-	2478035..2478319 (+)	285	WP_000171859.1	hypothetical protein	-
CSB78_RS12795	-	2478436..2478633 (-)	198	WP_000025835.1	hypothetical protein	-
CSB78_RS12800 (CSB78_2304)	-	2478793..2479266 (+)	474	WP_001236734.1	DUF4930 family protein	-
CSB78_RS12805 (CSB78_2305)	-	2479340..2479459 (+)	120	WP_000840602.1	hypothetical protein	-
CSB78_RS12810 (CSB78_2306)	mreC	2479658..2480500 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
CSB78_RS12815 (CSB78_2307)	mreD	2480500..2481030 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
CSB78_RS12820 (CSB78_2308)	rplU	2481266..2481574 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
CSB78_RS12825 (CSB78_2309)	-	2481580..2481900 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CSB78_RS12830 (CSB78_2310)	rpmA	2481912..2482196 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25325.31 Da Isoelectric Point: 7.0540

                                >NTDB_id=256404 CSB78_RS12785 WP_000692871.1 2477281..2477967(+) (ysxA/radC) [Staphylococcus aureus strain AR_0222]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLEHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=256404 CSB78_RS12785 WP_000692871.1 2477281..2477967(+) (ysxA/radC) [Staphylococcus aureus strain AR_0222]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGAGCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373

Detailed information NTG0256404