Detailed information NTG0256278

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: CVD07_RS16960
• Genome accession: NZ_CP024897
• Coordinates: 3438430..3439593 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis strain CN026
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3433430..3444593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVD07_RS16930 (CVD07_16980)	-	3433695..3434114 (-)	420	WP_014419009.1	TIGR03826 family flagellar region protein	-
CVD07_RS16935 (CVD07_16985)	comFC	3434188..3434877 (-)	690	WP_201741798.1	phosphoribosyltransferase family protein	Machinery gene
CVD07_RS16940 (CVD07_16990)	-	3434883..3435167 (-)	285	WP_003151389.1	competence protein ComFB	-
CVD07_RS16945 (CVD07_16995)	comFA	3435225..3436610 (-)	1386	WP_100262037.1	DEAD/DEAH box helicase	Machinery gene
CVD07_RS16950 (CVD07_17000)	-	3436718..3437566 (-)	849	WP_072177036.1	DegV family protein	-
CVD07_RS16955 (CVD07_17005)	degU	3437664..3438353 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
CVD07_RS16960 (CVD07_17010)	degS	3438430..3439593 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
CVD07_RS16965 (CVD07_17015)	-	3439816..3440463 (+)	648	WP_007407485.1	YigZ family protein	-
CVD07_RS16970 (CVD07_17020)	-	3440468..3441682 (+)	1215	WP_100262038.1	LCP family protein	-
CVD07_RS16975 (CVD07_17025)	-	3441781..3442857 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
CVD07_RS16980 (CVD07_17030)	-	3442990..3444186 (-)	1197	WP_094296236.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=256278 CVD07_RS16960 WP_007407484.1 3438430..3439593(-) (degS) [Bacillus velezensis strain CN026]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=256278 CVD07_RS16960 WP_007407484.1 3438430..3439593(-) (degS) [Bacillus velezensis strain CN026]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGTCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCTGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951