Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CVD07_RS16935 Genome accession   NZ_CP024897
Coordinates   3434188..3434877 (-) Length   229 a.a.
NCBI ID   WP_201741798.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429188..3439877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS16900 (CVD07_16950) fliW 3429279..3429710 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  CVD07_RS16905 (CVD07_16955) - 3429740..3430309 (-) 570 WP_017418818.1 DUF6470 family protein -
  CVD07_RS16910 (CVD07_16960) flgL 3430400..3431317 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  CVD07_RS16915 (CVD07_16965) flgK 3431329..3432846 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  CVD07_RS16920 (CVD07_16970) - 3432862..3433344 (-) 483 WP_100262036.1 flagellar protein FlgN -
  CVD07_RS16925 (CVD07_16975) flgM 3433359..3433625 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CVD07_RS16930 (CVD07_16980) - 3433695..3434114 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CVD07_RS16935 (CVD07_16985) comFC 3434188..3434877 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  CVD07_RS16940 (CVD07_16990) - 3434883..3435167 (-) 285 WP_003151389.1 competence protein ComFB -
  CVD07_RS16945 (CVD07_16995) comFA 3435225..3436610 (-) 1386 WP_100262037.1 DEAD/DEAH box helicase Machinery gene
  CVD07_RS16950 (CVD07_17000) - 3436718..3437566 (-) 849 WP_072177036.1 DegV family protein -
  CVD07_RS16955 (CVD07_17005) degU 3437664..3438353 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CVD07_RS16960 (CVD07_17010) degS 3438430..3439593 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.0779

>NTDB_id=256275 CVD07_RS16935 WP_201741798.1 3434188..3434877(-) (comFC) [Bacillus velezensis strain CN026]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=256275 CVD07_RS16935 WP_201741798.1 3434188..3434877(-) (comFC) [Bacillus velezensis strain CN026]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment