Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CVD07_RS16945 Genome accession   NZ_CP024897
Coordinates   3435225..3436610 (-) Length   461 a.a.
NCBI ID   WP_100262037.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3430225..3441610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS16910 (CVD07_16960) flgL 3430400..3431317 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  CVD07_RS16915 (CVD07_16965) flgK 3431329..3432846 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  CVD07_RS16920 (CVD07_16970) - 3432862..3433344 (-) 483 WP_100262036.1 flagellar protein FlgN -
  CVD07_RS16925 (CVD07_16975) flgM 3433359..3433625 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CVD07_RS16930 (CVD07_16980) - 3433695..3434114 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CVD07_RS16935 (CVD07_16985) comFC 3434188..3434877 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  CVD07_RS16940 (CVD07_16990) - 3434883..3435167 (-) 285 WP_003151389.1 competence protein ComFB -
  CVD07_RS16945 (CVD07_16995) comFA 3435225..3436610 (-) 1386 WP_100262037.1 DEAD/DEAH box helicase Machinery gene
  CVD07_RS16950 (CVD07_17000) - 3436718..3437566 (-) 849 WP_072177036.1 DegV family protein -
  CVD07_RS16955 (CVD07_17005) degU 3437664..3438353 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CVD07_RS16960 (CVD07_17010) degS 3438430..3439593 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CVD07_RS16965 (CVD07_17015) - 3439816..3440463 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52651.07 Da        Isoelectric Point: 10.2029

>NTDB_id=256276 CVD07_RS16945 WP_100262037.1 3435225..3436610(-) (comFA) [Bacillus velezensis strain CN026]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGHLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFYFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=256276 CVD07_RS16945 WP_100262037.1 3435225..3436610(-) (comFA) [Bacillus velezensis strain CN026]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCACCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTGTTCGTCCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTTATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAGCATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment