Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CVD07_RS16955 Genome accession   NZ_CP024897
Coordinates   3437664..3438353 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CN026     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3432664..3443353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS16920 (CVD07_16970) - 3432862..3433344 (-) 483 WP_100262036.1 flagellar protein FlgN -
  CVD07_RS16925 (CVD07_16975) flgM 3433359..3433625 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CVD07_RS16930 (CVD07_16980) - 3433695..3434114 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CVD07_RS16935 (CVD07_16985) comFC 3434188..3434877 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  CVD07_RS16940 (CVD07_16990) - 3434883..3435167 (-) 285 WP_003151389.1 competence protein ComFB -
  CVD07_RS16945 (CVD07_16995) comFA 3435225..3436610 (-) 1386 WP_100262037.1 DEAD/DEAH box helicase Machinery gene
  CVD07_RS16950 (CVD07_17000) - 3436718..3437566 (-) 849 WP_072177036.1 DegV family protein -
  CVD07_RS16955 (CVD07_17005) degU 3437664..3438353 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CVD07_RS16960 (CVD07_17010) degS 3438430..3439593 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CVD07_RS16965 (CVD07_17015) - 3439816..3440463 (+) 648 WP_007407485.1 YigZ family protein -
  CVD07_RS16970 (CVD07_17020) - 3440468..3441682 (+) 1215 WP_100262038.1 LCP family protein -
  CVD07_RS16975 (CVD07_17025) - 3441781..3442857 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=256277 CVD07_RS16955 WP_003219701.1 3437664..3438353(-) (degU) [Bacillus velezensis strain CN026]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=256277 CVD07_RS16955 WP_003219701.1 3437664..3438353(-) (degU) [Bacillus velezensis strain CN026]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCGTTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment