Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CU076_RS06630 | Genome accession | NZ_CP024830 |
| Coordinates | 1288807..1289343 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain CREC-532 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1265131..1309657 | 1288807..1289343 | within | 0 |
Gene organization within MGE regions
Location: 1265131..1309657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU076_RS06515 (CU076_06520) | - | 1265385..1266965 (+) | 1581 | Protein_1186 | SopA family protein | - |
| CU076_RS06525 (CU076_06530) | ubiC | 1267188..1267685 (+) | 498 | WP_001326644.1 | chorismate lyase | - |
| CU076_RS06530 (CU076_06535) | ubiA | 1267698..1268570 (+) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| CU076_RS06535 (CU076_06540) | plsB | 1268725..1271148 (-) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| CU076_RS06540 (CU076_06545) | dgkA | 1271319..1271687 (+) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| CU076_RS06545 (CU076_06550) | lexA | 1271797..1272405 (+) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| CU076_RS06550 (CU076_06555) | dinF | 1272478..1273803 (+) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| CU076_RS06555 (CU076_06560) | yjbJ | 1273919..1274128 (+) | 210 | WP_001030593.1 | CsbD family protein | - |
| CU076_RS06560 (CU076_06565) | zur | 1274170..1274685 (-) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| CU076_RS28430 (CU076_06570) | yjbL | 1275003..1275257 (+) | 255 | WP_000912571.1 | protein YjbL | - |
| CU076_RS06570 (CU076_06575) | yjbM | 1275248..1275988 (+) | 741 | WP_000478761.1 | DUF2713 domain-containing protein | - |
| CU076_RS06575 (CU076_06580) | dusA | 1276351..1277388 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| CU076_RS06580 (CU076_06585) | pspG | 1277522..1277764 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| CU076_RS06585 (CU076_06590) | qorA | 1277930..1278913 (-) | 984 | WP_000235508.1 | quinone oxidoreductase | - |
| CU076_RS06590 (CU076_06595) | dnaB | 1278996..1280411 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| CU076_RS06595 (CU076_06600) | alr | 1280464..1281543 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| CU076_RS06600 (CU076_06605) | tyrB | 1281796..1282989 (+) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| CU076_RS06605 (CU076_06610) | yjbS | 1283491..1283694 (-) | 204 | WP_001321562.1 | protein YjbS | - |
| CU076_RS06610 (CU076_06615) | aphA | 1284096..1284809 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| CU076_RS06615 (CU076_06620) | yjbQ | 1284920..1285336 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| CU076_RS06620 (CU076_06625) | yjbR | 1285340..1285696 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| CU076_RS06625 (CU076_06630) | uvrA | 1285731..1288553 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| CU076_RS06630 (CU076_06635) | ssb | 1288807..1289343 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| CU076_RS06635 (CU076_06640) | - | 1289502..1290749 (+) | 1248 | WP_000414651.1 | site-specific integrase | - |
| CU076_RS06640 (CU076_06645) | - | 1290736..1292274 (+) | 1539 | WP_001333349.1 | site-specific integrase | - |
| CU076_RS06645 (CU076_06650) | - | 1292291..1294324 (+) | 2034 | WP_100183798.1 | integrase | - |
| CU076_RS27655 | - | 1294317..1294736 (+) | 420 | WP_001062122.1 | hypothetical protein | - |
| CU076_RS06655 (CU076_06660) | avs4 | 1294812..1299575 (+) | 4764 | WP_000240574.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| CU076_RS06665 (CU076_06670) | - | 1300114..1300935 (-) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| CU076_RS06670 (CU076_06675) | yjcB | 1301343..1301624 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| CU076_RS06680 (CU076_06685) | pdeC | 1302054..1303640 (+) | 1587 | WP_000019548.1 | c-di-GMP phosphodiesterase PdeC | - |
| CU076_RS06685 (CU076_06690) | soxS | 1303643..1303966 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| CU076_RS06690 (CU076_06695) | soxR | 1304052..1304516 (+) | 465 | WP_000412430.1 | redox-sensitive transcriptional activator SoxR | - |
| CU076_RS06710 (CU076_06715) | ghxP | 1305062..1306411 (+) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| CU076_RS06715 (CU076_06720) | yjcE | 1306562..1308211 (+) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| CU076_RS06720 (CU076_06725) | espX5 | 1308365..1309657 (-) | 1293 | WP_001270095.1 | T3SS effector pentapeptide repeat protein EspX5 | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=255705 CU076_RS06630 WP_000168305.1 1288807..1289343(+) (ssb) [Escherichia coli strain CREC-532]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=255705 CU076_RS06630 WP_000168305.1 1288807..1289343(+) (ssb) [Escherichia coli strain CREC-532]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |