Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SDE_RS05245 | Genome accession | NC_007912 |
| Coordinates | 1278410..1278937 (+) | Length | 175 a.a. |
| NCBI ID | WP_011467478.1 | Uniprot ID | Q21M21 |
| Organism | Saccharophagus degradans 2-40 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1273410..1283937
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SDE_RS05230 (Sde_0994) | - | 1275819..1276484 (-) | 666 | WP_011467476.1 | LuxR C-terminal-related transcriptional regulator | - |
| SDE_RS05240 (Sde_0995) | - | 1276925..1278271 (+) | 1347 | WP_041324278.1 | MFS transporter | - |
| SDE_RS05245 (Sde_0996) | ssb | 1278410..1278937 (+) | 528 | WP_011467478.1 | single-stranded DNA-binding protein | Machinery gene |
| SDE_RS05250 (Sde_0997) | - | 1279011..1279910 (+) | 900 | WP_011467479.1 | sugar nucleotide-binding protein | - |
| SDE_RS05255 (Sde_0998) | fabB | 1280006..1281223 (-) | 1218 | WP_011467480.1 | beta-ketoacyl-ACP synthase I | - |
| SDE_RS05260 (Sde_0999) | fabA | 1281340..1281864 (-) | 525 | WP_011467481.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA | - |
| SDE_RS05265 (Sde_1000) | galU | 1282263..1283087 (+) | 825 | WP_011467482.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18754.70 Da Isoelectric Point: 4.9746
>NTDB_id=25566 SDE_RS05245 WP_011467478.1 1278410..1278937(+) (ssb) [Saccharophagus degradans 2-40]
MAQRGVNKVIIVGNLGQDPETKYTASGAAITNVSIATSETWKDKQTGQAQERTEWHRVVFFNRLAEIAGEYLRKGSKVYI
EGALRTRKWQDQGGQDRYTTEIVANEMQMLDSRGGSDDSMGGGYQNAPSRPAPAQAPAQQGGGAPAYGGGRPQPAPAPAA
PPAPDMDSFDDDIPF
MAQRGVNKVIIVGNLGQDPETKYTASGAAITNVSIATSETWKDKQTGQAQERTEWHRVVFFNRLAEIAGEYLRKGSKVYI
EGALRTRKWQDQGGQDRYTTEIVANEMQMLDSRGGSDDSMGGGYQNAPSRPAPAQAPAQQGGGAPAYGGGRPQPAPAPAA
PPAPDMDSFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=25566 SDE_RS05245 WP_011467478.1 1278410..1278937(+) (ssb) [Saccharophagus degradans 2-40]
ATGGCGCAACGAGGTGTAAATAAAGTCATTATTGTTGGTAATCTAGGGCAAGACCCAGAAACCAAATACACTGCCAGTGG
CGCAGCAATTACTAACGTAAGTATTGCAACGTCAGAAACATGGAAGGATAAGCAAACCGGTCAAGCGCAAGAGCGCACTG
AATGGCACCGAGTAGTGTTTTTTAATCGCTTAGCGGAAATTGCCGGCGAATATTTACGCAAGGGCAGCAAAGTTTATATC
GAAGGCGCTCTGCGTACACGCAAGTGGCAAGATCAAGGTGGCCAAGATCGTTACACTACTGAAATTGTCGCGAACGAGAT
GCAAATGCTCGACTCTCGCGGTGGCAGCGATGACAGTATGGGCGGCGGTTATCAAAATGCCCCTAGTCGCCCAGCGCCTG
CTCAAGCCCCTGCCCAGCAAGGTGGTGGTGCGCCAGCATACGGCGGCGGTCGTCCACAGCCTGCTCCAGCCCCAGCTGCG
CCTCCTGCGCCAGACATGGACAGCTTTGACGACGATATTCCATTCTAA
ATGGCGCAACGAGGTGTAAATAAAGTCATTATTGTTGGTAATCTAGGGCAAGACCCAGAAACCAAATACACTGCCAGTGG
CGCAGCAATTACTAACGTAAGTATTGCAACGTCAGAAACATGGAAGGATAAGCAAACCGGTCAAGCGCAAGAGCGCACTG
AATGGCACCGAGTAGTGTTTTTTAATCGCTTAGCGGAAATTGCCGGCGAATATTTACGCAAGGGCAGCAAAGTTTATATC
GAAGGCGCTCTGCGTACACGCAAGTGGCAAGATCAAGGTGGCCAAGATCGTTACACTACTGAAATTGTCGCGAACGAGAT
GCAAATGCTCGACTCTCGCGGTGGCAGCGATGACAGTATGGGCGGCGGTTATCAAAATGCCCCTAGTCGCCCAGCGCCTG
CTCAAGCCCCTGCCCAGCAAGGTGGTGGTGCGCCAGCATACGGCGGCGGTCGTCCACAGCCTGCTCCAGCCCCAGCTGCG
CCTCCTGCGCCAGACATGGACAGCTTTGACGACGATATTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
58.889 |
100 |
0.606 |
| ssb | Vibrio cholerae strain A1552 |
53.191 |
100 |
0.571 |
| ssb | Neisseria meningitidis MC58 |
46.927 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.927 |
100 |
0.48 |