Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CU078_RS05725 | Genome accession | NZ_CP024821 |
| Coordinates | 1032767..1033270 (+) | Length | 167 a.a. |
| NCBI ID | WP_072644843.1 | Uniprot ID | - |
| Organism | Escherichia coli strain CREC-591 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 999214..1042261 | 1032767..1033270 | within | 0 |
Gene organization within MGE regions
Location: 999214..1042261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU078_RS05460 (CU078_05460) | - | 999214..1001253 (-) | 2040 | WP_077891786.1 | phage tailspike protein | - |
| CU078_RS05465 (CU078_05465) | - | 1001354..1002256 (-) | 903 | WP_072644829.1 | phage antirepressor N-terminal domain-containing protein | - |
| CU078_RS05470 (CU078_05470) | - | 1002319..1002540 (-) | 222 | WP_072644830.1 | hypothetical protein | - |
| CU078_RS05475 (CU078_05475) | - | 1002537..1002677 (-) | 141 | WP_001386205.1 | Arc family DNA-binding protein | - |
| CU078_RS05480 (CU078_05480) | - | 1002783..1003034 (+) | 252 | WP_001283827.1 | Arc family DNA-binding protein | - |
| CU078_RS05485 (CU078_05485) | - | 1003031..1003240 (+) | 210 | WP_001036007.1 | hypothetical protein | - |
| CU078_RS05490 (CU078_05490) | - | 1003215..1003493 (-) | 279 | WP_223195166.1 | hemolysin XhlA family protein | - |
| CU078_RS05495 (CU078_05495) | - | 1003725..1003904 (+) | 180 | WP_001085430.1 | hypothetical protein | - |
| CU078_RS05500 (CU078_05500) | - | 1003918..1004283 (-) | 366 | WP_072644831.1 | hypothetical protein | - |
| CU078_RS05505 (CU078_05505) | - | 1004335..1004703 (+) | 369 | WP_085956046.1 | hypothetical protein | - |
| CU078_RS05510 (CU078_05510) | - | 1004728..1006638 (-) | 1911 | WP_000331835.1 | hypothetical protein | - |
| CU078_RS05515 (CU078_05515) | - | 1006638..1008023 (-) | 1386 | WP_072644833.1 | DNA transfer protein | - |
| CU078_RS05520 (CU078_05520) | - | 1008034..1008726 (-) | 693 | WP_000964872.1 | DNA transfer protein | - |
| CU078_RS05525 (CU078_05525) | - | 1008729..1009184 (-) | 456 | WP_072644834.1 | DUF2824 family protein | - |
| CU078_RS05530 (CU078_05530) | - | 1009184..1010137 (-) | 954 | WP_001535935.1 | tail needle knob protein | - |
| CU078_RS05535 (CU078_05535) | - | 1010137..1011555 (-) | 1419 | WP_072644835.1 | packaged DNA stabilization protein gp10 | - |
| CU078_RS05540 (CU078_05540) | - | 1011555..1012055 (-) | 501 | WP_021514122.1 | packaged DNA stabilization gp4 family protein | - |
| CU078_RS05545 (CU078_05545) | - | 1012033..1012269 (-) | 237 | WP_021568315.1 | hypothetical protein | - |
| CU078_RS05550 (CU078_05550) | - | 1012314..1013609 (-) | 1296 | WP_021568314.1 | P22 phage major capsid protein family protein | - |
| CU078_RS05555 (CU078_05555) | - | 1013609..1014520 (-) | 912 | WP_000373006.1 | scaffold protein | - |
| CU078_RS05560 (CU078_05560) | - | 1014534..1016699 (-) | 2166 | WP_072644836.1 | portal protein | - |
| CU078_RS05565 (CU078_05565) | - | 1016700..1018199 (-) | 1500 | WP_072644837.1 | terminase family protein | - |
| CU078_RS05570 (CU078_05570) | - | 1018177..1018665 (-) | 489 | WP_077890887.1 | DNA-packaging protein | - |
| CU078_RS05575 (CU078_05575) | - | 1018745..1018987 (-) | 243 | WP_000807788.1 | DUF2560 family protein | - |
| CU078_RS05580 (CU078_05580) | - | 1019341..1019859 (-) | 519 | WP_001016386.1 | Rha family transcriptional regulator | - |
| CU078_RS05585 (CU078_05585) | - | 1020059..1020496 (-) | 438 | WP_072644839.1 | lysis protein | - |
| CU078_RS05590 (CU078_05590) | - | 1020493..1020969 (-) | 477 | WP_021521977.1 | glycoside hydrolase family protein | - |
| CU078_RS05595 (CU078_05595) | - | 1020953..1021276 (-) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| CU078_RS05610 (CU078_05610) | - | 1021739..1022257 (-) | 519 | WP_072644840.1 | antiterminator Q family protein | - |
| CU078_RS05615 (CU078_05615) | - | 1022254..1022442 (-) | 189 | WP_000994516.1 | protein ninH | - |
| CU078_RS05620 (CU078_05620) | - | 1022439..1022801 (-) | 363 | WP_001008200.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CU078_RS05625 (CU078_05625) | - | 1022798..1023088 (-) | 291 | WP_000002231.1 | DUF1364 domain-containing protein | - |
| CU078_RS05630 (CU078_05630) | - | 1023088..1023357 (-) | 270 | WP_001279421.1 | hypothetical protein | - |
| CU078_RS05635 (CU078_05635) | - | 1023350..1023520 (-) | 171 | WP_000566866.1 | protein NinF | - |
| CU078_RS05640 (CU078_05640) | - | 1023517..1023699 (-) | 183 | WP_001254250.1 | NinE family protein | - |
| CU078_RS05645 (CU078_05645) | - | 1023696..1024223 (-) | 528 | WP_000153280.1 | phage N-6-adenine-methyltransferase | - |
| CU078_RS05650 (CU078_05650) | - | 1024220..1024660 (-) | 441 | WP_047400585.1 | recombination protein NinB | - |
| CU078_RS05665 (CU078_05665) | - | 1024939..1026819 (-) | 1881 | WP_001322819.1 | toprim domain-containing protein | - |
| CU078_RS05670 (CU078_05670) | - | 1026927..1027787 (-) | 861 | WP_000067068.1 | replication protein | - |
| CU078_RS05675 (CU078_05675) | - | 1027780..1027926 (-) | 147 | WP_000166207.1 | DUF2740 family protein | - |
| CU078_RS05680 (CU078_05680) | - | 1027959..1028252 (-) | 294 | WP_000251073.1 | lambda phage CII family protein | - |
| CU078_RS05685 (CU078_05685) | - | 1028361..1028546 (-) | 186 | WP_000276886.1 | Cro/CI family transcriptional regulator | - |
| CU078_RS05690 (CU078_05690) | - | 1028627..1029277 (+) | 651 | WP_000856967.1 | LexA family transcriptional regulator | - |
| CU078_RS05695 (CU078_05695) | - | 1029591..1029896 (+) | 306 | WP_001309622.1 | hypothetical protein | - |
| CU078_RS05700 (CU078_05700) | - | 1030167..1030367 (+) | 201 | WP_000213975.1 | antirestriction Ral family protein | - |
| CU078_RS05705 (CU078_05705) | - | 1030543..1031511 (+) | 969 | WP_072644841.1 | cell envelope biogenesis protein TolA | - |
| CU078_RS05710 (CU078_05710) | - | 1031536..1031667 (+) | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| CU078_RS05715 (CU078_05715) | kil | 1031652..1031804 (+) | 153 | WP_001518153.1 | host cell division inhibitory peptide Kil | - |
| CU078_RS05720 (CU078_05720) | - | 1032059..1032766 (+) | 708 | WP_072644842.1 | Rad52/Rad22 family DNA repair protein | - |
| CU078_RS05725 (CU078_05725) | ssb | 1032767..1033270 (+) | 504 | WP_072644843.1 | single-stranded DNA-binding protein | Machinery gene |
| CU078_RS05730 (CU078_05730) | - | 1033279..1033827 (+) | 549 | WP_072644844.1 | 3'-5' exonuclease | - |
| CU078_RS05735 (CU078_05735) | - | 1033844..1034137 (+) | 294 | WP_072644845.1 | phage anti-RecBCD protein | - |
| CU078_RS05740 (CU078_05740) | - | 1034148..1034312 (+) | 165 | WP_001214452.1 | DUF2737 family protein | - |
| CU078_RS05745 (CU078_05745) | - | 1034309..1034944 (+) | 636 | WP_077890885.1 | hypothetical protein | - |
| CU078_RS05750 (CU078_05750) | - | 1034941..1035546 (+) | 606 | WP_072644846.1 | ead/Ea22-like family protein | - |
| CU078_RS05755 (CU078_05755) | - | 1035613..1035855 (+) | 243 | WP_000492058.1 | DUF4222 domain-containing protein | - |
| CU078_RS05765 (CU078_05765) | - | 1035974..1036141 (+) | 168 | WP_001518157.1 | hypothetical protein | - |
| CU078_RS05770 (CU078_05770) | - | 1036181..1036399 (+) | 219 | WP_001303849.1 | excisionase | - |
| CU078_RS05775 (CU078_05775) | - | 1036377..1037450 (+) | 1074 | WP_001609775.1 | tyrosine-type recombinase/integrase | - |
| CU078_RS05780 (CU078_05780) | torS | 1037545..1040289 (+) | 2745 | WP_001367057.1 | TMAO reductase system sensor histidine kinase/response regulator TorS | - |
| CU078_RS05785 (CU078_05785) | yccM | 1040361..1041434 (+) | 1074 | WP_000829672.1 | 4Fe-4S binding protein | - |
| CU078_RS05790 (CU078_05790) | gnsA | 1041482..1041655 (-) | 174 | WP_001019197.1 | addiction module toxin, GnsA/GnsB family | - |
| CU078_RS05795 (CU078_05795) | ymcE | 1041645..1041875 (-) | 231 | WP_001316982.1 | protein YmcE | - |
| CU078_RS05800 (CU078_05800) | ymcF | 1041850..1042038 (-) | 189 | WP_071524630.1 | cold-shock protein | - |
| CU078_RS05805 (CU078_05805) | cspG | 1042049..1042261 (-) | 213 | WP_000066490.1 | cold shock protein CspG | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18627.83 Da Isoelectric Point: 7.4683
>NTDB_id=255653 CU078_RS05725 WP_072644843.1 1032767..1033270(+) (ssb) [Escherichia coli strain CREC-591]
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEKKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEIIVGVGGTMQMIGGKQGGNEQSSPQRNNGQQPQQQGNHSEPPMDFDDDIPFAPVTLPFP
RHAIHAI
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEKKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEIIVGVGGTMQMIGGKQGGNEQSSPQRNNGQQPQQQGNHSEPPMDFDDDIPFAPVTLPFP
RHAIHAI
Nucleotide
Download Length: 504 bp
>NTDB_id=255653 CU078_RS05725 WP_072644843.1 1032767..1033270(+) (ssb) [Escherichia coli strain CREC-591]
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAGTGGCGTGATAAGCAAACTGGAGAGAAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAATCATCGTGGGCGTTGG
TGGAACTATGCAAATGATTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGTCAGCAACCTC
AGCAGCAAGGGAATCACAGCGAACCACCTATGGATTTTGACGACGATATCCCCTTTGCACCAGTAACTCTCCCCTTCCCT
CGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAGTGGCGTGATAAGCAAACTGGAGAGAAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAATCATCGTGGGCGTTGG
TGGAACTATGCAAATGATTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGTCAGCAACCTC
AGCAGCAAGGGAATCACAGCGAACCACCTATGGATTTTGACGACGATATCCCCTTTGCACCAGTAACTCTCCCCTTCCCT
CGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.452 |
100 |
0.641 |
| ssb | Glaesserella parasuis strain SC1401 |
51.381 |
100 |
0.557 |
| ssb | Neisseria gonorrhoeae MS11 |
41.477 |
100 |
0.437 |
| ssb | Neisseria meningitidis MC58 |
40.341 |
100 |
0.425 |