Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CTV95_RS19040 Genome accession   NZ_CP024780
Coordinates   4197542..4198084 (-) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain BZA12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4192542..4203084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTV95_RS19015 (CTV95_19015) - 4192891..4193889 (+) 999 WP_010279314.1 carbohydrate ABC transporter permease -
  CTV95_RS19020 (CTV95_19020) - 4193898..4194950 (+) 1053 WP_039483648.1 carbohydrate ABC transporter permease -
  CTV95_RS19025 (CTV95_19025) - 4194950..4195987 (+) 1038 WP_100018198.1 LacI family DNA-binding transcriptional regulator -
  CTV95_RS19030 (CTV95_19030) - 4196074..4196532 (-) 459 WP_100018199.1 GNAT family N-acetyltransferase -
  CTV95_RS19035 (CTV95_19035) - 4196772..4197386 (+) 615 WP_100018200.1 hypothetical protein -
  CTV95_RS19040 (CTV95_19040) ssb 4197542..4198084 (-) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CTV95_RS19045 (CTV95_19045) uvrA 4198335..4201169 (+) 2835 WP_014916582.1 excinuclease ABC subunit UvrA -
  CTV95_RS19050 (CTV95_19050) - 4201185..4201604 (+) 420 WP_100018201.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CTV95_RS19055 (CTV95_19055) cas6f 4201980..4202534 (-) 555 WP_100018202.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=255404 CTV95_RS19040 WP_039283288.1 4197542..4198084(-) (ssb) [Pectobacterium brasiliense strain BZA12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=255404 CTV95_RS19040 WP_039283288.1 4197542..4198084(-) (ssb) [Pectobacterium brasiliense strain BZA12]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment