Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CUC43_RS08835 Genome accession   NZ_CP024771
Coordinates   1609400..1609921 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus thuringiensis LM1212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1604400..1614921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC43_RS08815 (CUC43_09105) rplI 1605610..1606056 (-) 447 WP_029440301.1 50S ribosomal protein L9 -
  CUC43_RS08820 (CUC43_09110) - 1606053..1608026 (-) 1974 WP_001113900.1 DHH family phosphoesterase -
  CUC43_RS08825 (CUC43_09115) - 1608105..1609040 (-) 936 WP_029440300.1 YybS family protein -
  CUC43_RS08830 (CUC43_09120) rpsR 1609121..1609354 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  CUC43_RS08835 (CUC43_09125) ssbA 1609400..1609921 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  CUC43_RS08840 (CUC43_09130) rpsF 1609948..1610238 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  CUC43_RS08845 (CUC43_09135) ychF 1610430..1611530 (-) 1101 WP_029440299.1 redox-regulated ATPase YchF -
  CUC43_RS08850 (CUC43_09140) - 1611646..1611843 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  CUC43_RS08855 (CUC43_09145) - 1611864..1612745 (-) 882 WP_029440298.1 mechanosensitive ion channel family protein -
  CUC43_RS08860 (CUC43_09150) yyaC 1613005..1613601 (+) 597 WP_001020718.1 spore protease YyaC -
  CUC43_RS08865 (CUC43_09155) spo0J 1613622..1614473 (-) 852 WP_001991691.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=255359 CUC43_RS08835 WP_000981967.1 1609400..1609921(-) (ssbA) [Bacillus thuringiensis LM1212]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=255359 CUC43_RS08835 WP_000981967.1 1609400..1609921(-) (ssbA) [Bacillus thuringiensis LM1212]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment