Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CT122_RS27895 | Genome accession | NZ_CP024712 |
| Coordinates | 5910840..5911409 (-) | Length | 189 a.a. |
| NCBI ID | WP_003426596.1 | Uniprot ID | A0A0K8M6E3 |
| Organism | Pseudomonas syringae pv. actinidiae strain MAFF212063 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5905840..5916409
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CT122_RS27870 (CT122_27870) | - | 5906690..5907583 (+) | 894 | WP_003379184.1 | ABC transporter permease subunit | - |
| CT122_RS27875 (CT122_27875) | - | 5907580..5908686 (+) | 1107 | WP_003379187.1 | ABC transporter ATP-binding protein | - |
| CT122_RS27880 (CT122_27880) | - | 5908693..5909454 (+) | 762 | WP_003379189.1 | glycerophosphoryl diester phosphodiesterase | - |
| CT122_RS27885 (CT122_27885) | - | 5909451..5910194 (+) | 744 | WP_003379192.1 | inositol monophosphatase family protein | - |
| CT122_RS27890 (CT122_27890) | - | 5910317..5910616 (+) | 300 | WP_003379193.1 | hypothetical protein | - |
| CT122_RS27895 (CT122_27895) | ssb | 5910840..5911409 (-) | 570 | WP_003426596.1 | single-stranded DNA-binding protein | Machinery gene |
| CT122_RS27900 (CT122_27900) | - | 5911419..5912813 (-) | 1395 | WP_099978439.1 | MFS transporter | - |
| CT122_RS27905 (CT122_27905) | uvrA | 5912943..5915777 (+) | 2835 | WP_004397023.1 | excinuclease ABC subunit UvrA | - |
| CT122_RS27910 (CT122_27910) | bfr | 5915871..5916335 (-) | 465 | WP_004397024.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 20974.10 Da Isoelectric Point: 5.9404
>NTDB_id=255199 CT122_RS27895 WP_003426596.1 5910840..5911409(-) (ssb) [Pseudomonas syringae pv. actinidiae strain MAFF212063]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 570 bp
>NTDB_id=255199 CT122_RS27895 WP_003426596.1 5910840..5911409(-) (ssb) [Pseudomonas syringae pv. actinidiae strain MAFF212063]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGATGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGATGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
47.368 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
44.681 |
99.471 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.681 |
99.471 |
0.444 |