Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DSOL99_RS17670 | Genome accession | NZ_CP024711 |
| Coordinates | 3976633..3977184 (+) | Length | 183 a.a. |
| NCBI ID | WP_022634792.1 | Uniprot ID | - |
| Organism | Dickeya solani strain IFB 0099 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3976633..4000396 | 3976633..3977184 | within | 0 |
Gene organization within MGE regions
Location: 3976633..4000396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSOL99_RS17670 (DSOL99_03507) | ssb | 3976633..3977184 (+) | 552 | WP_022634792.1 | single-stranded DNA-binding protein | Machinery gene |
| DSOL99_RS17680 (DSOL99_03509) | - | 3977469..3977654 (-) | 186 | WP_022634794.1 | hypothetical protein | - |
| DSOL99_RS17685 (DSOL99_03510) | - | 3977833..3978321 (+) | 489 | WP_022634795.1 | hypothetical protein | - |
| DSOL99_RS17690 (DSOL99_03511) | - | 3978584..3979156 (+) | 573 | WP_022634796.1 | DUF4255 domain-containing protein | - |
| DSOL99_RS17695 (DSOL99_03512) | - | 3979162..3979959 (+) | 798 | WP_022634797.1 | hypothetical protein | - |
| DSOL99_RS17700 (DSOL99_03513) | - | 3980104..3981657 (+) | 1554 | WP_022634798.1 | phage tail sheath family protein | - |
| DSOL99_RS17705 (DSOL99_03514) | - | 3981709..3982179 (+) | 471 | WP_022634799.1 | phage tail protein | - |
| DSOL99_RS17710 (DSOL99_03515) | - | 3982266..3982724 (+) | 459 | WP_023637986.1 | phage tail protein | - |
| DSOL99_RS17715 (DSOL99_03516) | - | 3982745..3982927 (+) | 183 | WP_022634801.1 | hypothetical protein | - |
| DSOL99_RS17720 (DSOL99_03517) | - | 3982943..3983590 (+) | 648 | WP_022634802.1 | hypothetical protein | - |
| DSOL99_RS17725 (DSOL99_03518) | vgrG | 3983602..3985392 (+) | 1791 | WP_022634803.1 | type VI secretion system tip protein VgrG | - |
| DSOL99_RS17735 (DSOL99_03519) | - | 3985851..3986150 (+) | 300 | WP_022634804.1 | PAAR domain-containing protein | - |
| DSOL99_RS17740 (DSOL99_03520) | - | 3986153..3986572 (+) | 420 | WP_022634805.1 | GPW/gp25 family protein | - |
| DSOL99_RS17745 (DSOL99_03521) | - | 3986569..3990693 (+) | 4125 | WP_022634806.1 | baseplate J/gp47 family protein | - |
| DSOL99_RS17750 (DSOL99_03522) | - | 3990812..3991639 (+) | 828 | WP_022634807.1 | hypothetical protein | - |
| DSOL99_RS17755 (DSOL99_03523) | - | 3991642..3994116 (+) | 2475 | WP_022634808.1 | transcriptional regulator | - |
| DSOL99_RS17760 (DSOL99_03524) | - | 3994113..3997862 (+) | 3750 | WP_022634809.1 | contractile injection system tape measure protein | - |
| DSOL99_RS17765 (DSOL99_03525) | - | 3997922..4000396 (+) | 2475 | WP_023637987.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 19717.72 Da Isoelectric Point: 4.9658
>NTDB_id=255166 DSOL99_RS17670 WP_022634792.1 3976633..3977184(+) (ssb) [Dickeya solani strain IFB 0099]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=255166 DSOL99_RS17670 WP_022634792.1 3976633..3977184(+) (ssb) [Dickeya solani strain IFB 0099]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.054 |
100 |
0.749 |
| ssb | Glaesserella parasuis strain SC1401 |
54.645 |
100 |
0.546 |
| ssb | Neisseria meningitidis MC58 |
45.503 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
45.503 |
100 |
0.47 |