Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CTB91_RS17700 | Genome accession | NZ_CP024710 |
| Coordinates | 3981266..3981817 (+) | Length | 183 a.a. |
| NCBI ID | WP_022634792.1 | Uniprot ID | - |
| Organism | Dickeya solani strain IFB0223 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3981266..4005029 | 3981266..3981817 | within | 0 |
Gene organization within MGE regions
Location: 3981266..4005029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTB91_RS17700 (CTB91_03509) | ssb | 3981266..3981817 (+) | 552 | WP_022634792.1 | single-stranded DNA-binding protein | Machinery gene |
| CTB91_RS17710 (CTB91_03511) | - | 3982102..3982287 (-) | 186 | WP_022634794.1 | hypothetical protein | - |
| CTB91_RS17715 (CTB91_03512) | - | 3982466..3982954 (+) | 489 | WP_022634795.1 | hypothetical protein | - |
| CTB91_RS17720 (CTB91_03513) | - | 3983217..3983789 (+) | 573 | WP_022634796.1 | DUF4255 domain-containing protein | - |
| CTB91_RS17725 (CTB91_03514) | - | 3983795..3984592 (+) | 798 | WP_022634797.1 | hypothetical protein | - |
| CTB91_RS17730 (CTB91_03515) | - | 3984737..3986290 (+) | 1554 | WP_022634798.1 | phage tail sheath family protein | - |
| CTB91_RS17735 (CTB91_03516) | - | 3986342..3986812 (+) | 471 | WP_022634799.1 | phage tail protein | - |
| CTB91_RS17740 (CTB91_03517) | - | 3986899..3987357 (+) | 459 | WP_023637986.1 | phage tail protein | - |
| CTB91_RS17745 (CTB91_03518) | - | 3987378..3987560 (+) | 183 | WP_022634801.1 | hypothetical protein | - |
| CTB91_RS17750 (CTB91_03519) | - | 3987576..3988223 (+) | 648 | WP_022634802.1 | hypothetical protein | - |
| CTB91_RS17755 (CTB91_03520) | vgrG | 3988235..3990025 (+) | 1791 | WP_022634803.1 | type VI secretion system tip protein VgrG | - |
| CTB91_RS17765 (CTB91_03521) | - | 3990484..3990783 (+) | 300 | WP_022634804.1 | PAAR domain-containing protein | - |
| CTB91_RS17770 (CTB91_03522) | - | 3990786..3991205 (+) | 420 | WP_022634805.1 | GPW/gp25 family protein | - |
| CTB91_RS17775 (CTB91_03523) | - | 3991202..3995326 (+) | 4125 | WP_022634806.1 | baseplate J/gp47 family protein | - |
| CTB91_RS17780 (CTB91_03524) | - | 3995445..3996272 (+) | 828 | WP_022634807.1 | hypothetical protein | - |
| CTB91_RS17785 (CTB91_03525) | - | 3996275..3998749 (+) | 2475 | WP_022634808.1 | transcriptional regulator | - |
| CTB91_RS17790 (CTB91_03526) | - | 3998746..4002495 (+) | 3750 | WP_022634809.1 | contractile injection system tape measure protein | - |
| CTB91_RS17795 (CTB91_03527) | - | 4002555..4005029 (+) | 2475 | WP_023637987.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 19717.72 Da Isoelectric Point: 4.9658
>NTDB_id=255146 CTB91_RS17700 WP_022634792.1 3981266..3981817(+) (ssb) [Dickeya solani strain IFB0223]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=255146 CTB91_RS17700 WP_022634792.1 3981266..3981817(+) (ssb) [Dickeya solani strain IFB0223]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.054 |
100 |
0.749 |
| ssb | Glaesserella parasuis strain SC1401 |
54.645 |
100 |
0.546 |
| ssb | Neisseria meningitidis MC58 |
45.503 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
45.503 |
100 |
0.47 |