Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CUC45_RS22215 Genome accession   NZ_CP024683
Coordinates   4537485..4538009 (+) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain UMH13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4532485..4543009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC45_RS22200 (CUC45_22370) aphA 4533098..4533811 (+) 714 WP_032948323.1 acid phosphatase AphA -
  CUC45_RS22205 (CUC45_22375) - 4533939..4534295 (+) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  CUC45_RS22210 (CUC45_22380) uvrA 4534411..4537233 (-) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  CUC45_RS22215 (CUC45_22385) ssb 4537485..4538009 (+) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CUC45_RS22220 (CUC45_22390) - 4538076..4538357 (-) 282 WP_032948324.1 YjcB family protein -
  CUC45_RS22225 (CUC45_22395) - 4538910..4540496 (+) 1587 WP_032948325.1 EAL domain-containing protein -
  CUC45_RS22230 (CUC45_22400) soxS 4540499..4540822 (-) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  CUC45_RS22235 (CUC45_22405) soxR 4540909..4541367 (+) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=255059 CUC45_RS22215 WP_003826621.1 4537485..4538009(+) (ssb) [Citrobacter freundii strain UMH13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=255059 CUC45_RS22215 WP_003826621.1 4537485..4538009(+) (ssb) [Citrobacter freundii strain UMH13]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAATCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment