Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CUC49_RS20815 Genome accession   NZ_CP024676
Coordinates   4265176..4265700 (+) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter pasteurii strain UMH17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4260176..4270700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC49_RS20800 (CUC49_20995) aphA 4260834..4261547 (+) 714 WP_048213924.1 acid phosphatase AphA -
  CUC49_RS20805 (CUC49_21000) - 4261668..4262024 (+) 357 WP_048213923.1 MmcQ/YjbR family DNA-binding protein -
  CUC49_RS20810 (CUC49_21005) uvrA 4262102..4264924 (-) 2823 WP_061067023.1 excinuclease ABC subunit UvrA -
  CUC49_RS20815 (CUC49_21010) ssb 4265176..4265700 (+) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CUC49_RS20820 (CUC49_21015) - 4265767..4266048 (-) 282 WP_048213921.1 YjcB family protein -
  CUC49_RS20825 (CUC49_21020) - 4266600..4268186 (+) 1587 WP_121585329.1 EAL domain-containing protein -
  CUC49_RS20830 (CUC49_21025) soxS 4268189..4268512 (-) 324 WP_005132611.1 superoxide response transcriptional regulator SoxS -
  CUC49_RS20835 (CUC49_21030) soxR 4268599..4269057 (+) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=254965 CUC49_RS20815 WP_003826621.1 4265176..4265700(+) (ssb) [Citrobacter pasteurii strain UMH17]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=254965 CUC49_RS20815 WP_003826621.1 4265176..4265700(+) (ssb) [Citrobacter pasteurii strain UMH17]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAATACACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCGCCGGCAGGTGGTGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment