Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   DL538_RS14135 Genome accession   NZ_CP029609
Coordinates   2706463..2708859 (-) Length   798 a.a.
NCBI ID   WP_004398511.1    Uniprot ID   O34481
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2701463..2713859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS14100 (DL538_14015) glnQ 2702536..2703264 (+) 729 WP_032726290.1 amino acid ABC transporter ATP-binding protein -
  DL538_RS14105 (DL538_14020) glnH 2703286..2704107 (+) 822 WP_131227718.1 glutamine ABC transporter substrate-binding protein GlnH -
  DL538_RS14110 (DL538_14025) glnM 2704168..2704818 (+) 651 WP_131227720.1 amino acid ABC transporter permease -
  DL538_RS14115 (DL538_14030) glnP 2704835..2705491 (+) 657 WP_021480217.1 amino acid ABC transporter permease -
  DL538_RS14120 (DL538_14035) yrzQ 2705526..2705657 (-) 132 WP_003229780.1 YrzQ family protein -
  DL538_RS14125 (DL538_14040) - 2705679..2705870 (-) 192 WP_003225893.1 hypothetical protein -
  DL538_RS14130 (DL538_14045) - 2705882..2706406 (-) 525 WP_080010572.1 hypothetical protein -
  DL538_RS14135 (DL538_14050) recD/recD2/recDB 2706463..2708859 (-) 2397 WP_004398511.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DL538_RS14140 (DL538_14055) yrrB 2708884..2709504 (-) 621 WP_015251572.1 tetratricopeptide repeat protein -
  DL538_RS14145 (DL538_14060) mnmA 2709590..2710705 (-) 1116 WP_004398509.1 tRNA 2-thiouridine(34) synthase MnmA -
  DL538_RS14150 (DL538_14065) iscSA 2710733..2711875 (-) 1143 WP_131227722.1 cysteine desulfurase family protein -
  DL538_RS14155 (DL538_14070) cymR 2711894..2712310 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  DL538_RS14160 (DL538_14075) rarA 2712513..2713778 (+) 1266 WP_131227724.1 replication-associated recombination protein A Machinery gene

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89183.74 Da        Isoelectric Point: 5.0291

>NTDB_id=254965 DL538_RS14135 WP_004398511.1 2706463..2708859(-) (recD/recD2/recDB) [Bacillus subtilis subsp. subtilis strain G7]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=254965 DL538_RS14135 WP_004398511.1 2706463..2708859(-) (recD/recD2/recDB) [Bacillus subtilis subsp. subtilis strain G7]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAGGCATCATTCAATATTTATCGAGTGATTTATT
CGAGGGGATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAATAAAATATTGGCTGATG
CTTCAGTGCTCTATGATGTTCCCAGACTCTCAAAAAAGAAAGCAGACACGCTGGCTGGTGCATTGCAGCGGCATCAGGGA
CTGGAGCAAATCATGATTTCCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTATGAAAATCTATCAAGCCTATGAATC
CGAGACTCTTGAAAAGATTCAGGAAAATCCTTATCAGCTTGTGAAGGATGTAGAAGGCATCGGGTTTGGGAAAGCGGATG
AGCTGGGCAGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCTATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAACAGCTGATCATTGACACCCAATCTCTGTTAAATCAGTCAGCAAG
GGAAGGACAGCGCATTACAGAAATGGATGCCGCTAACGCAATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTTCCTTCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCTAGCCAAACC
GAATATGAGAACCAGTTTCCCGAATCAGAGTTTTTGCTCGCGTTGGGAGAACTGGAAGAACGGATGGACGTTCAGTATGC
CCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGAAAAA
CGACGGTAATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGGATGAGTGAATCAACGGGACTTCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGTGCTGAAGGCTTTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATTATCGATGAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGGCGATCCCTGATCATATACAAATC
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGTCCGGGACAAGTGCTCAGAGACCTGCTGGCATCCCAGGTGAT
TCCGACTGTGAGACTGACAGACATCTATCGTCAGGCGGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACAAAGGACCGTTCCTTTATTCGCTGCGGCGGGTCGCAAATCAAAGAAGTA
GTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACAGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATTAATGAATTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTGAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CGTTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34481

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment