Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CUC50_RS22595 | Genome accession | NZ_CP024675 |
| Coordinates | 4651275..4651799 (+) | Length | 174 a.a. |
| NCBI ID | WP_003826621.1 | Uniprot ID | A0A5B0T4S2 |
| Organism | Citrobacter werkmanii strain UMH18 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4646275..4656799
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC50_RS22575 (CUC50_22765) | aphA | 4646919..4647632 (+) | 714 | WP_038636269.1 | acid phosphatase AphA | - |
| CUC50_RS22580 (CUC50_22770) | - | 4647759..4648115 (+) | 357 | WP_038636271.1 | MmcQ/YjbR family DNA-binding protein | - |
| CUC50_RS22585 (CUC50_22775) | uvrA | 4648201..4651023 (-) | 2823 | WP_087856535.1 | excinuclease ABC subunit UvrA | - |
| CUC50_RS22595 (CUC50_22785) | ssb | 4651275..4651799 (+) | 525 | WP_003826621.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| CUC50_RS22600 (CUC50_22790) | - | 4651865..4652146 (-) | 282 | WP_038636276.1 | YjcB family protein | - |
| CUC50_RS22610 (CUC50_22805) | - | 4652698..4654284 (+) | 1587 | WP_038636279.1 | EAL domain-containing protein | - |
| CUC50_RS22615 (CUC50_22810) | soxS | 4654287..4654610 (-) | 324 | WP_005132611.1 | superoxide response transcriptional regulator SoxS | - |
| CUC50_RS22620 (CUC50_22815) | soxR | 4654697..4655155 (+) | 459 | WP_003826630.1 | redox-sensitive transcriptional activator SoxR | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18621.66 Da Isoelectric Point: 5.2456
>NTDB_id=254942 CUC50_RS22595 WP_003826621.1 4651275..4651799(+) (ssb) [Citrobacter werkmanii strain UMH18]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=254942 CUC50_RS22595 WP_003826621.1 4651275..4651799(+) (ssb) [Citrobacter werkmanii strain UMH18]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGTAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGATGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTTGACGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGTAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGATGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTTGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.889 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |