Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CUC52_RS22415 Genome accession   NZ_CP024672
Coordinates   4549935..4550459 (+) Length   174 a.a.
NCBI ID   WP_046671365.1    Uniprot ID   -
Organism   Citrobacter freundii strain HM38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4544935..4555459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC52_RS22400 (CUC52_22555) aphA 4545548..4546261 (+) 714 WP_016149406.1 acid phosphatase AphA -
  CUC52_RS22405 (CUC52_22560) - 4546389..4546745 (+) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  CUC52_RS22410 (CUC52_22565) uvrA 4546861..4549683 (-) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  CUC52_RS22415 (CUC52_22570) ssb 4549935..4550459 (+) 525 WP_046671365.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CUC52_RS22420 (CUC52_22575) - 4550526..4550807 (-) 282 WP_044715249.1 YjcB family protein -
  CUC52_RS22425 (CUC52_22580) - 4551360..4552946 (+) 1587 WP_049016404.1 EAL domain-containing protein -
  CUC52_RS22430 (CUC52_22585) soxS 4552949..4553272 (-) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  CUC52_RS22435 (CUC52_22590) soxR 4553359..4553817 (+) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18607.63 Da        Isoelectric Point: 5.2456

>NTDB_id=254897 CUC52_RS22415 WP_046671365.1 4549935..4550459(+) (ssb) [Citrobacter freundii strain HM38]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGGQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=254897 CUC52_RS22415 WP_046671365.1 4549935..4550459(+) (ssb) [Citrobacter freundii strain HM38]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGGGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494

Multiple sequence alignment