Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SAOUHSC_01763 Genome accession   NC_007795
Coordinates   1662732..1663388 (-) Length   218 a.a.
NCBI ID   YP_500268.1    Uniprot ID   P31337
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1657732..1668388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_01755 rpmA 1658571..1658855 (-) 285 YP_500260.1 50S ribosomal protein L27 -
  SAOUHSC_01756 - 1658867..1659187 (-) 321 YP_500261.1 hypothetical protein -
  SAOUHSC_01757 rplU 1659193..1659501 (-) 309 YP_500262.1 50S ribosomal protein L21 -
  SAOUHSC_01758 - 1659668..1660198 (-) 531 YP_500263.1 hypothetical protein -
  SAOUHSC_01759 - 1660198..1661040 (-) 843 YP_500264.1 rod shape-determining protein MreC -
  SAOUHSC_01760 - 1661240..1661359 (-) 120 YP_500265.1 hypothetical protein -
  SAOUHSC_01761 - 1661433..1661906 (-) 474 YP_500266.1 hypothetical protein -
  SAOUHSC_01761a - 1662066..1662263 (+) 198 YP_008530242.1 membrane protein -
  SAOUHSC_01762 - 1662380..1662664 (-) 285 YP_500267.1 hypothetical protein -
  SAOUHSC_01763 ysxA/radC 1662732..1663388 (-) 657 YP_500268.1 hypothetical protein Machinery gene
  SAOUHSC_01764 - 1663415..1664122 (-) 708 YP_500269.1 hypothetical protein -
  SAOUHSC_01765 - 1664224..1664334 (+) 111 YP_500270.1 hypothetical protein -
  SAOUHSC_01766 - 1664392..1665663 (-) 1272 YP_500271.1 folylpolyglutamate synthase/dihydrofolate synthase -
  SAOUHSC_01767 valS 1665676..1668306 (-) 2631 YP_500272.1 valyl-tRNA synthetase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24133.84 Da        Isoelectric Point: 7.0533

>NTDB_id=25486 SAOUHSC_01763 YP_500268.1 1662732..1663388(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus NCTC 8325]
MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGE
RMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAII
AVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 657 bp        

>NTDB_id=25486 SAOUHSC_01763 YP_500268.1 1662732..1663388(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATACAGAATTATTAGCTATATTAATTAACACCGG
AAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTT
CAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCATTTGAGTTAGGGGAA
AGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAGTGATGTTGCTGATTATATGATTCCAACAAT
GAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTA
AAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAATGCCAATGCAATCATC
GCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATATCATAACAACAATGAGGTTGAAGGAGTGTGG
TTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACT
TTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(2-70)

RadC-like JAB domain (RadC)

(93-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P31337

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

53.991

97.706

0.528
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

100

0.399
  radC Streptococcus pneumoniae TIGR4

40.952

96.33

0.394
  radC Streptococcus pneumoniae R6

40.476

96.33

0.39
  radC Streptococcus pneumoniae D39

40.476

96.33

0.39

Multiple sequence alignment