Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CPZ87_RS01455 | Genome accession | NZ_CP024645 |
| Coordinates | 334355..334855 (+) | Length | 166 a.a. |
| NCBI ID | WP_085748918.1 | Uniprot ID | A0A1W6L313 |
| Organism | Piscinibacter gummiphilus strain NBRC 109400 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 329355..339855
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ87_RS01435 (CPZ87_01435) | - | 329809..330105 (-) | 297 | WP_085748914.1 | hypothetical protein | - |
| CPZ87_RS01440 (CPZ87_01440) | recQ | 330243..332129 (-) | 1887 | WP_085748915.1 | DNA helicase RecQ | - |
| CPZ87_RS01445 (CPZ87_01445) | - | 332222..333379 (-) | 1158 | WP_085748916.1 | pectinesterase family protein | - |
| CPZ87_RS01450 (CPZ87_01450) | - | 333508..334125 (-) | 618 | WP_085748917.1 | DUF502 domain-containing protein | - |
| CPZ87_RS01455 (CPZ87_01455) | ssb | 334355..334855 (+) | 501 | WP_085748918.1 | single-stranded DNA-binding protein | Machinery gene |
| CPZ87_RS01460 (CPZ87_01460) | - | 334989..336242 (+) | 1254 | WP_085748919.1 | site-specific integrase | - |
| CPZ87_RS01465 (CPZ87_01465) | - | 336226..337761 (+) | 1536 | WP_085748920.1 | site-specific integrase | - |
| CPZ87_RS01470 (CPZ87_01470) | - | 337758..339845 (+) | 2088 | WP_174694872.1 | integrase | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 17918.92 Da Isoelectric Point: 5.9796
>NTDB_id=254681 CPZ87_RS01455 WP_085748918.1 334355..334855(+) (ssb) [Piscinibacter gummiphilus strain NBRC 109400]
MASINKVILIGNLGRDPEVRYTANGAAICNVTIATSRNWKDKNSGDKMEETEWHRVVFYDRLAEIAGEYLKKGRSCYVEG
RLKTRKWQDKDGAEKYTTEIIADNLQLLGGREGGGGGGGDEGGGGGYAPRERSAPAPRPSAAPRQAPAPAPKSSTGFDDM
DDDIPF
MASINKVILIGNLGRDPEVRYTANGAAICNVTIATSRNWKDKNSGDKMEETEWHRVVFYDRLAEIAGEYLKKGRSCYVEG
RLKTRKWQDKDGAEKYTTEIIADNLQLLGGREGGGGGGGDEGGGGGYAPRERSAPAPRPSAAPRQAPAPAPKSSTGFDDM
DDDIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=254681 CPZ87_RS01455 WP_085748918.1 334355..334855(+) (ssb) [Piscinibacter gummiphilus strain NBRC 109400]
ATGGCGAGCATCAACAAAGTCATCCTCATCGGCAACCTGGGGCGCGACCCCGAGGTCCGTTACACCGCCAACGGCGCCGC
CATCTGCAACGTCACCATCGCCACGTCGCGCAACTGGAAGGACAAGAATTCCGGCGACAAGATGGAAGAGACCGAATGGC
ACCGTGTGGTCTTCTACGACCGCCTGGCAGAGATCGCCGGCGAATACCTCAAGAAGGGCCGCTCGTGCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCGCCGAGAAGTACACCACCGAAATCATCGCCGACAACCTCCAGCT
GCTGGGCGGCCGTGAAGGCGGCGGCGGTGGTGGTGGCGACGAAGGCGGCGGTGGCGGCTACGCTCCGCGCGAACGCAGCG
CCCCGGCCCCGCGTCCGTCTGCCGCGCCCCGCCAGGCGCCGGCTCCTGCACCGAAGTCGTCGACCGGGTTCGACGACATG
GACGACGACATTCCGTTCTAA
ATGGCGAGCATCAACAAAGTCATCCTCATCGGCAACCTGGGGCGCGACCCCGAGGTCCGTTACACCGCCAACGGCGCCGC
CATCTGCAACGTCACCATCGCCACGTCGCGCAACTGGAAGGACAAGAATTCCGGCGACAAGATGGAAGAGACCGAATGGC
ACCGTGTGGTCTTCTACGACCGCCTGGCAGAGATCGCCGGCGAATACCTCAAGAAGGGCCGCTCGTGCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCGCCGAGAAGTACACCACCGAAATCATCGCCGACAACCTCCAGCT
GCTGGGCGGCCGTGAAGGCGGCGGCGGTGGTGGTGGCGACGAAGGCGGCGGTGGCGGCTACGCTCCGCGCGAACGCAGCG
CCCCGGCCCCGCGTCCGTCTGCCGCGCCCCGCCAGGCGCCGGCTCCTGCACCGAAGTCGTCGACCGGGTTCGACGACATG
GACGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
49.718 |
100 |
0.53 |
| ssb | Neisseria gonorrhoeae MS11 |
50.286 |
100 |
0.53 |
| ssb | Vibrio cholerae strain A1552 |
47.778 |
100 |
0.518 |
| ssb | Glaesserella parasuis strain SC1401 |
45.652 |
100 |
0.506 |