Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CS557_RS00910 Genome accession   NZ_CP024632
Coordinates   195124..195708 (+) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain lzh-X15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190124..200708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS00890 (CS557_00890) - 191131..191484 (+) 354 WP_099947899.1 DUF1304 domain-containing protein -
  CS557_RS00895 (CS557_00895) tenA 191639..192313 (-) 675 WP_004951380.1 thiaminase II -
  CS557_RS00900 (CS557_00900) - 192488..193570 (+) 1083 WP_004909842.1 DUF475 domain-containing protein -
  CS557_RS00905 (CS557_00905) - 193707..195071 (+) 1365 WP_099947900.1 MFS transporter -
  CS557_RS00910 (CS557_00910) ssb 195124..195708 (+) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  CS557_RS00915 (CS557_00920) - 196216..197658 (+) 1443 WP_004909824.1 amino acid permease -
  CS557_RS00920 (CS557_00925) - 197730..199229 (-) 1500 WP_004964862.1 PLP-dependent aminotransferase family protein -
  CS557_RS00925 (CS557_00930) gabT 199384..200676 (+) 1293 WP_099947901.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=254573 CS557_RS00910 WP_004909838.1 195124..195708(+) (ssb) [Acinetobacter junii strain lzh-X15]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=254573 CS557_RS00910 WP_004909838.1 195124..195708(+) (ssb) [Acinetobacter junii strain lzh-X15]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ATTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACACGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGCCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAATACAGGCTATAACAATAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCTGCTCCAGCTGA
CTTAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392

Multiple sequence alignment