Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   CTZ23_RS14465 Genome accession   NZ_CP024620
Coordinates   3000425..3001567 (+) Length   380 a.a.
NCBI ID   WP_104989251.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2995425..3006567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS14445 (CTZ23_14500) - 2995969..2998020 (-) 2052 WP_104989249.1 TonB-dependent copper receptor -
  CTZ23_RS14450 (CTZ23_14505) - 2998094..2998516 (-) 423 WP_016658991.1 DUF2946 family protein -
  CTZ23_RS14455 (CTZ23_14510) def 2998607..2999131 (-) 525 WP_005181462.1 peptide deformylase -
  CTZ23_RS14460 (CTZ23_14515) tsaP 2999251..3000408 (+) 1158 WP_104989250.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CTZ23_RS14465 (CTZ23_14520) dprA 3000425..3001567 (+) 1143 WP_104989251.1 DNA-processing protein DprA Machinery gene
  CTZ23_RS14470 (CTZ23_14525) - 3001612..3002178 (+) 567 WP_104989252.1 L-threonylcarbamoyladenylate synthase -
  CTZ23_RS14480 (CTZ23_14535) - 3002559..3003470 (-) 912 WP_045796654.1 DMT family transporter -
  CTZ23_RS14485 (CTZ23_14545) - 3003799..3004341 (+) 543 WP_045796641.1 glutathione peroxidase -
  CTZ23_RS14490 (CTZ23_14550) - 3004524..3005132 (+) 609 WP_104989255.1 hypothetical protein -
  CTZ23_RS14495 (CTZ23_14555) - 3005254..3006252 (+) 999 WP_045796643.1 pirin family protein -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42098.84 Da        Isoelectric Point: 6.8775

>NTDB_id=254455 CTZ23_RS14465 WP_104989251.1 3000425..3001567(+) (dprA) [Acinetobacter indicus strain SGAir0564]
MLNTISPGHLATIRLWYLVQHSLPSFYKLIRHFGSAAAATEAGNLQRWAELGLHQNHLQRARDFHQTQAQADFQHLLQRV
QQHTDFILIPEDVGYPTQLLPYTDKPPILFGQGQAQPLLQPQVAIVGSRKASPHGRQVAYDFAYYLSEKGFFINSGLAQG
IDEAAHQGGLKHQRTIAVMGTGLDLTYPATHQGLRDQILQQHGTIISEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LDSGSLITAKLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWLSQQQATSSGTASAAAHPT
LPEHLLALYSQLDWVGKNMDQLASELQQETAHLTAQLMELELLGMAMQQSGLYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=254455 CTZ23_RS14465 WP_104989251.1 3000425..3001567(+) (dprA) [Acinetobacter indicus strain SGAir0564]
ATGCTGAATACGATATCACCCGGTCATCTCGCAACGATTCGCCTGTGGTATCTGGTTCAGCATTCGCTCCCCAGCTTTTA
TAAATTAATCCGGCACTTCGGTTCGGCCGCTGCGGCCACCGAAGCCGGCAACCTGCAGCGCTGGGCAGAACTGGGACTGC
ATCAGAACCATCTGCAACGCGCACGGGATTTTCATCAAACACAGGCACAAGCCGACTTCCAGCACTTGCTGCAGCGCGTC
CAGCAACATACCGATTTTATTCTTATTCCCGAAGATGTCGGTTACCCCACCCAACTATTGCCCTATACCGATAAACCGCC
AATTTTATTTGGTCAGGGACAGGCGCAACCTTTACTTCAGCCGCAAGTGGCAATTGTCGGCAGTCGCAAAGCCAGTCCGC
ATGGCCGGCAGGTGGCTTATGACTTTGCCTATTATTTAAGTGAAAAAGGCTTTTTTATTAATAGTGGCCTGGCGCAAGGC
ATTGATGAAGCAGCCCATCAGGGCGGCCTGAAACATCAACGTACCATTGCTGTGATGGGTACTGGTCTGGACTTAACCTA
CCCGGCCACACATCAGGGTCTGCGTGACCAGATTCTGCAACAGCATGGCACCATTATCAGTGAGTTCCTGCCACAGACCA
AACCGCTACAGCAGCATTTTCCACGGCGTAACCGTATTGTCAGTGGACTTAGCCTGGGAGTAATTGTGGCCGAAGCCACG
CTGGACAGCGGCTCGCTGATTACCGCCAAACTGGCGGCCGAGCAAGGTAAAACCGTGTTTGCCATTCCGGGACATATCTA
CAGTGAATTTCATCAGGGCTGCCATCAACTGATTCGGGAAGGTGCAATTCTGGTCGATCATCCGGAACAGGTCATTGAAG
ACCTGGCCTTGCCAACCCAATGGCTGAGTCAACAGCAGGCGACCTCATCCGGTACAGCATCTGCGGCTGCCCATCCAACC
TTACCCGAACATCTGCTGGCCCTATACAGCCAGCTGGACTGGGTCGGTAAAAACATGGACCAGCTGGCCAGCGAACTGCA
ACAGGAAACCGCCCATTTAACCGCGCAGTTAATGGAACTGGAGCTGCTCGGGATGGCGATGCAGCAATCGGGGCTATATC
TGCGTTGTCGTCCATCGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

70.027

99.211

0.695

  dprA Acinetobacter baumannii strain A118

69.761

99.211

0.692

  dprA Acinetobacter baylyi ADP1

64.66

100

0.65

  dprA Vibrio cholerae strain A1552

43.155

88.421

0.382


Multiple sequence alignment