Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CS873_RS01405 Genome accession   NZ_CP024610
Coordinates   283570..284073 (+) Length   167 a.a.
NCBI ID   WP_099974109.1    Uniprot ID   -
Organism   Lactobacillus terrae strain NIBRBAC000499792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 278570..289073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS873_RS01390 gyrB 278580..280538 (+) 1959 WP_099974106.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CS873_RS01395 gyrA 280560..283049 (+) 2490 WP_099974107.1 DNA gyrase subunit A -
  CS873_RS01400 rpsF 283237..283533 (+) 297 WP_099974108.1 30S ribosomal protein S6 -
  CS873_RS01405 ssb 283570..284073 (+) 504 WP_099974109.1 single-stranded DNA-binding protein Machinery gene
  CS873_RS01410 rpsR 284102..284338 (+) 237 WP_099974110.1 30S ribosomal protein S18 -
  CS873_RS01415 - 284454..286460 (+) 2007 WP_099974111.1 DHH family phosphoesterase -
  CS873_RS01420 rplI 286472..286927 (+) 456 WP_099974112.1 50S ribosomal protein L9 -
  CS873_RS01425 dnaB 286931..288301 (+) 1371 WP_099974113.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18489.99 Da        Isoelectric Point: 4.5280

>NTDB_id=254214 CS873_RS01405 WP_099974109.1 283570..284073(+) (ssb) [Lactobacillus terrae strain NIBRBAC000499792]
MINRVVLVGRLTRDPELRYTSGGSAVASFTVAVNRQFTNQQGEREADFINCVIWRKAAENFSNFTNKGSLVGIEGRLQTR
SYENQQGNRVYVTEVVVDSFSLLESRSESERRSSSNTNNSAPSNQQSSSFAPQDSNNNNDSNSFGGMSDPFADNSKPIEI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=254214 CS873_RS01405 WP_099974109.1 283570..284073(+) (ssb) [Lactobacillus terrae strain NIBRBAC000499792]
ATGATTAATCGAGTAGTTCTTGTAGGACGCTTAACACGAGACCCTGAGCTTAGATATACTTCTGGTGGCTCAGCTGTAGC
TAGTTTTACAGTTGCTGTTAACAGACAATTTACTAATCAACAGGGCGAACGTGAAGCCGACTTTATTAATTGTGTTATTT
GGCGTAAAGCTGCTGAAAACTTCTCAAACTTTACTAATAAAGGATCACTTGTAGGAATCGAAGGACGTTTACAAACACGT
TCTTATGAGAACCAACAAGGCAATAGAGTATATGTAACAGAAGTTGTCGTAGACAGTTTCTCATTACTAGAATCTAGATC
TGAATCTGAGAGAAGATCTTCATCAAACACAAATAATTCAGCTCCTTCGAACCAACAATCATCTTCATTTGCTCCACAAG
ATAGTAATAATAATAACGATTCTAATTCATTTGGCGGTATGAGCGATCCATTTGCTGACAACAGTAAACCAATCGAGATA
TCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.279

100

0.683
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

63.473

0.377

Multiple sequence alignment