Detailed information NTG0254053

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DLJ52_RS00520
• Genome accession: NZ_CP029559
• Coordinates: 85554..86552 (+)
• Length: 332 a.a.
• NCBI ID: WP_019769254.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NIDR 6715-15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 80554..91552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLJ52_RS00505 (DLJ52_00505)	comX	83502..84125 (+)	624	WP_002962720.1	sigma-70 family RNA polymerase sigma factor	Regulator
DLJ52_RS00510 (DLJ52_00510)	rplM	84422..84868 (+)	447	WP_002962718.1	50S ribosomal protein L13	-
DLJ52_RS00515 (DLJ52_00515)	rpsI	84888..85280 (+)	393	WP_019775615.1	30S ribosomal protein S9	-
DLJ52_RS00520 (DLJ52_00520)	ruvB	85554..86552 (+)	999	WP_019769254.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DLJ52_RS00525 (DLJ52_00525)	-	86597..87022 (+)	426	WP_002962714.1	low molecular weight protein-tyrosine-phosphatase	-
DLJ52_RS00530 (DLJ52_00530)	-	87001..87435 (+)	435	WP_002962711.1	MORN repeat-containing protein	-
DLJ52_RS00535 (DLJ52_00535)	-	87432..89213 (+)	1782	WP_109982360.1	acyltransferase family protein	-
DLJ52_RS00540 (DLJ52_00540)	-	89615..90376 (+)	762	WP_019769258.1	hypothetical protein	-
DLJ52_RS00545 (DLJ52_00545)	-	90451..91149 (+)	699	WP_021674119.1	hypothetical protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37080.44 Da
• Isoelectric Point: 4.4040

>NTDB_id=254053 DLJ52_RS00520 WP_019769254.1 85554..86552(+) (ruvB) [Streptococcus sobrinus strain NIDR 6715-15]
MTRILDDEMMESEEQVERTLRPQTFKEYIGQDKVKDQLTIFIEAAKLRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGEASRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGINGHMEYYEAADLTEIVERTAEIFEAEITHEAAIELAKRSRGTPRIANRLLKRVRDYAQIIGDGLID
DKIADQALTMLDVDQEGLDYIDQKILKTMIEMYGGGPVGLGTLSINIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGINPKND

Nucleotide

• Length: 999 bp

>NTDB_id=254053 DLJ52_RS00520 WP_019769254.1 85554..86552(+) (ruvB) [Streptococcus sobrinus strain NIDR 6715-15]
ATGACTAGAATTTTGGATGATGAAATGATGGAAAGTGAAGAACAGGTCGAGCGAACGCTACGACCTCAAACTTTCAAAGA
ATATATTGGCCAGGATAAGGTCAAGGATCAGTTGACTATTTTTATTGAGGCAGCTAAGCTACGTGATGAAGCCTTAGATC
ATGTCCTCCTCTTTGGCCCCCCAGGCTTGGGGAAAACTACTATGGCTTTTGTCATCGCCAATGAGTTGGGGGTCAACCTC
AAACAAACTTCCGGTCCAGCTATTGAGAAGGCTGGAGACTTGGTGGCTATTCTCAATGATTTGGAGCCTGGGGATGTTCT
CTTTATCGATGAAATTCATCGGATGCCTATGGCTGTTGAAGAAGTGCTCTACAGTGCCATGGAAGATTTCTACATTGACA
TCATGATTGGGGCTGGCGAAGCCAGTCGCAGTGTCCACCTAGATTTGCCTCCCTTCACTTTAATAGGGGCGACAACTCGA
GCAGGGATGCTGTCTAACCCCTTGCGGGCTCGCTTTGGTATCAATGGTCACATGGAATACTATGAAGCAGCTGACTTGAC
TGAGATTGTCGAGCGGACGGCTGAGATTTTTGAGGCTGAAATAACCCACGAAGCTGCGATTGAATTGGCTAAACGTAGTC
GGGGGACTCCTCGGATTGCCAATCGCTTGCTCAAGCGGGTCCGGGATTATGCCCAGATTATTGGGGATGGTCTAATTGAT
GATAAGATTGCAGACCAGGCTTTGACCATGTTGGACGTTGATCAAGAAGGTTTAGACTACATCGACCAGAAGATTCTGAA
AACCATGATTGAGATGTACGGCGGTGGTCCAGTCGGCCTTGGAACCTTGTCCATCAATATTGCTGAAGAGCGGGAGACAG
TTGAGGATATGTACGAGCCCTACCTGATTCAAAAGGGCTTTATTATGCGGACACGCTCGGGTCGAGTGGCAACTGCTAAA
GCTTATGAACACCTAGGAATTAATCCTAAAAATGACTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.571	98.193	0.88
ruvB	Streptococcus pneumoniae R6	88.957	98.193	0.873
ruvB	Streptococcus pneumoniae D39	88.957	98.193	0.873
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.215	99.699	0.59
ruvB	Helicobacter pylori 26695	50.755	99.699	0.506
ruvB	Synechocystis sp. PCC 6803	50.633	95.181	0.482