Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DK181_RS09105 Genome accession   NZ_CP029490
Coordinates   1861307..1861975 (-) Length   222 a.a.
NCBI ID   WP_002960281.1    Uniprot ID   A0ABM6W6Y8
Organism   Streptococcus sobrinus strain SL1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1856307..1866975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS09065 (DK182_09065) - 1856333..1856809 (-) 477 WP_002960268.1 hypothetical protein -
  DK181_RS09070 (DK182_09070) - 1856837..1857634 (-) 798 WP_002960270.1 DNA adenine methylase -
  DK181_RS09075 (DK182_09075) - 1857711..1857959 (-) 249 WP_002960272.1 ASCH/PUA domain-containing protein -
  DK181_RS09080 (DK182_09080) - 1857960..1858385 (-) 426 WP_002960274.1 hypothetical protein -
  DK181_RS09090 (DK182_09090) - 1858733..1860217 (-) 1485 WP_002960276.1 primase C-terminal domain-containing protein -
  DK181_RS09095 (DK182_09095) - 1860298..1860483 (-) 186 WP_002960278.1 hypothetical protein -
  DK181_RS09100 (DK182_09100) hpf 1860683..1861231 (-) 549 WP_002960280.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DK181_RS09105 (DK182_09105) comFC/cflB 1861307..1861975 (-) 669 WP_002960281.1 ComF family protein Machinery gene
  DK181_RS09110 (DK182_09110) comFA/cflA 1861975..1863273 (-) 1299 WP_028798478.1 DEAD/DEAH box helicase Machinery gene
  DK181_RS09115 (DK182_09115) - 1863320..1863958 (+) 639 WP_002960285.1 YigZ family protein -
  DK181_RS09120 (DK182_09120) cysK 1864058..1864987 (+) 930 WP_019769631.1 cysteine synthase A -
  DK181_RS09125 (DK182_09125) - 1865206..1865556 (-) 351 WP_002960289.1 S1 RNA-binding domain-containing protein -
  DK181_RS09130 (DK182_09130) - 1865556..1866953 (-) 1398 WP_002960291.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 26109.19 Da        Isoelectric Point: 9.0082

>NTDB_id=253770 DK181_RS09105 WP_002960281.1 1861307..1861975(-) (comFC/cflB) [Streptococcus sobrinus strain SL1]
MTCLLCDTPVHQKESFTSLLFQFQKKNYICEDCWSRFERIDNLHCSSCYKSGVEGICQDCLCWQKQGHEIHHQALFIYNE
MMKQYFSSYKFQGDYLLRKIFSNEIKRALADYKSYTIVPIPLSEESLKKRKFNQVTGFLEDASISYQRLLEVQGKSKPTQ
SNKTRKERMQTKQFFQVANKEILPERILLVDDIYTTGATLLLARQVLYEKGVKTIKTFSLAR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=253770 DK181_RS09105 WP_002960281.1 1861307..1861975(-) (comFC/cflB) [Streptococcus sobrinus strain SL1]
ATGACTTGTTTACTCTGCGATACACCCGTTCATCAAAAAGAAAGTTTCACCTCGCTCCTCTTTCAGTTTCAAAAGAAAAA
CTATATTTGCGAGGACTGTTGGTCCCGCTTTGAAAGGATTGATAACCTGCACTGTTCCAGCTGTTACAAATCTGGTGTTG
AAGGAATTTGTCAGGATTGCCTCTGCTGGCAGAAGCAGGGCCATGAAATCCATCACCAAGCTCTTTTTATCTATAATGAA
ATGATGAAGCAGTACTTTTCATCCTATAAGTTTCAGGGAGATTATTTGTTAAGAAAAATTTTTTCAAATGAGATTAAAAG
GGCTTTAGCGGATTATAAATCCTATACAATTGTTCCCATTCCTTTGAGTGAGGAAAGTCTTAAAAAGAGGAAATTCAATC
AAGTGACTGGCTTTCTGGAGGATGCTTCAATAAGCTACCAAAGACTATTAGAAGTCCAAGGGAAAAGTAAACCAACTCAA
TCCAATAAGACAAGAAAGGAGAGAATGCAAACAAAACAATTCTTTCAGGTTGCTAATAAAGAAATATTGCCCGAACGGAT
TCTACTGGTTGATGACATCTATACAACAGGGGCGACACTTCTTCTGGCAAGGCAAGTTTTGTATGAAAAAGGAGTGAAAA
CTATAAAAACTTTTTCATTGGCCCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.45
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.446
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.441
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.437
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.437
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.437

Multiple sequence alignment