Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPZ97_RS23095 Genome accession   NZ_CP024466
Coordinates   4194981..4195517 (-) Length   178 a.a.
NCBI ID   WP_000168299.1    Uniprot ID   Q327X2
Organism   Shigella dysenteriae strain BU53M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4189981..4200517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ97_RS23065 ghxP 4190507..4191856 (-) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  CPZ97_RS23070 soxR 4192403..4192867 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  CPZ97_RS23075 soxS 4192953..4193276 (+) 324 WP_000019351.1 superoxide response transcriptional regulator SoxS -
  CPZ97_RS23080 - 4193279..4193491 (-) 213 Protein_4442 EAL domain-containing protein -
  CPZ97_RS23085 - 4193545..4194239 (+) 695 WP_087786203.1 IS1-like element IS1N family transposase -
  CPZ97_RS23090 - 4194601..4194882 (+) 282 WP_005021204.1 YjcB family protein -
  CPZ97_RS23095 ssb 4194981..4195517 (-) 537 WP_000168299.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CPZ97_RS23100 uvrA 4195771..4198593 (+) 2823 WP_000357751.1 excinuclease ABC subunit UvrA -
  CPZ97_RS23105 - 4198628..4198984 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CPZ97_RS23110 - 4198988..4199404 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CPZ97_RS23115 aphA 4199515..4199713 (-) 199 Protein_4449 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18991.04 Da        Isoelectric Point: 5.2358

>NTDB_id=253631 CPZ97_RS23095 WP_000168299.1 4194981..4195517(-) (ssb) [Shigella dysenteriae strain BU53M1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQLQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=253631 CPZ97_RS23095 WP_000168299.1 4194981..4195517(-) (ssb) [Shigella dysenteriae strain BU53M1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCTGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment