Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DKG78_RS16975 Genome accession   NZ_CP029466
Coordinates   3435436..3437421 (-) Length   661 a.a.
NCBI ID   WP_003151439.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3430436..3442421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS16955 (DKG78_17240) - 3430623..3431720 (-) 1098 WP_007614045.1 DUF4097 domain-containing protein -
  DKG78_RS16960 (DKG78_17245) - 3431745..3432071 (-) 327 WP_003151444.1 hypothetical protein -
  DKG78_RS16965 (DKG78_17250) - 3432269..3432529 (+) 261 WP_132105766.1 hypothetical protein -
  DKG78_RS16970 (DKG78_17255) uvrA 3432555..3435428 (-) 2874 WP_020954334.1 excinuclease ABC subunit UvrA Machinery gene
  DKG78_RS16975 (DKG78_17260) uvrB 3435436..3437421 (-) 1986 WP_003151439.1 excinuclease ABC subunit UvrB Machinery gene
  DKG78_RS16980 (DKG78_17265) - 3437597..3437833 (-) 237 WP_003151438.1 CsbA family protein -
  DKG78_RS16985 (DKG78_17270) - 3438134..3440635 (+) 2502 WP_132105764.1 PEP/pyruvate-binding domain-containing protein -
  DKG78_RS16990 (DKG78_17275) - 3440707..3441330 (+) 624 WP_015240677.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76447.20 Da        Isoelectric Point: 5.1906

>NTDB_id=253587 DKG78_RS16975 WP_003151439.1 3435436..3437421(-) (uvrB) [Bacillus amyloliquefaciens strain HM618]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITNSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=253587 DKG78_RS16975 WP_003151439.1 3435436..3437421(-) (uvrB) [Bacillus amyloliquefaciens strain HM618]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
AATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGTGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATCTGATTA
AAGAAGTGAATAAACCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTCCCGAACAACGCTGTCGAATATTTTGTCAGCTATTACGATTACTATCAGCCGGAGGCATACGTGCCTCAAACGGATAC
TTTTATAGAGAAAGACGCAAGCATTAATGATGAAATTGATAAACTGAGACACTCCGCGACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATTGCGAGTGTGTCATGCATATACGGTCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGGAACGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGCGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGAGATGAAATTGAGCGGATCAGAGAGGTCGACGCTTTGACCGGAGAAATTCTCGGCGACCGTGACCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACCCGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTGAAAGTGATGCACGAAAACGGCAAGCTCCTTGAAGCGCAGCGGCTTGAGCAGCGGACGAGATATGATC
TTGAAATGATGCGGGAAATGGGTTTTTGCTCAGGGATCGAGAACTATTCAAGACATTTGACACTCCGTCCGCCGGGCTCT
ACGCCATATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACATGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCGAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTCGAGGAATTTGAGAAACACATGCACAATATCGTGTACGTGTCGGCGACTCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGACCGACGGGACTCCTCGATCCCCTCATTGACGTCCGTCCGAT
CGAAGGACAGATTGACGATCTGATCGGCGAGATACAGGCGAGGATTGAACGGAATGAACGCGTTCTCGTGACGACTTTAA
CGAAAAAAATGTCAGAGGATCTGACCGATTATCTCAAGGAAATCGGTATCAAGGTCAATTATCTGCATTCCGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGAAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTCGATGCGGATAAAGAAGGCTTCCTCCGTTCTGAACGTTCGC
TGATTCAGACGATCGGACGGGCGGCACGAAACGCGGAAGGCCGCGTCATCATGTATGCCGATAAAATCACGAATTCGATG
GAGATCGCGATTAATGAAACGAAGCGCCGCCGGGAACAGCAGGAACGCTTTAACGAAATTCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAACTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTTAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(551-593)

Type III restriction enzyme, res subunit (ResIII)

(12-130)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699

Multiple sequence alignment