Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PYTT13_RS01070 | Genome accession | NZ_CP024422 |
| Coordinates | 218694..219182 (+) | Length | 162 a.a. |
| NCBI ID | WP_099647955.1 | Uniprot ID | - |
| Organism | Paracoccus yeei strain TT13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 213694..224182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYTT13_RS01050 (PYTT13_01050) | - | 215443..215991 (-) | 549 | WP_099647953.1 | hypothetical protein | - |
| PYTT13_RS01055 (PYTT13_01055) | hemB | 216165..217163 (+) | 999 | WP_028719830.1 | porphobilinogen synthase | - |
| PYTT13_RS01060 (PYTT13_01060) | - | 217247..217801 (+) | 555 | WP_088239192.1 | YSC84-related protein | - |
| PYTT13_RS01065 (PYTT13_01065) | - | 217833..218471 (-) | 639 | WP_099647954.1 | lytic transglycosylase domain-containing protein | - |
| PYTT13_RS01070 (PYTT13_01070) | ssb | 218694..219182 (+) | 489 | WP_099647955.1 | single-stranded DNA-binding protein | Machinery gene |
| PYTT13_RS01080 (PYTT13_01080) | tig | 219728..221062 (+) | 1335 | WP_099647956.1 | trigger factor | - |
| PYTT13_RS01085 (PYTT13_01085) | - | 221433..222308 (+) | 876 | WP_028719825.1 | hypothetical protein | - |
| PYTT13_RS01090 (PYTT13_01090) | - | 222346..222597 (-) | 252 | WP_028719824.1 | DUF2312 domain-containing protein | - |
| PYTT13_RS01095 (PYTT13_01095) | - | 222686..222913 (+) | 228 | WP_191569106.1 | hypothetical protein | - |
| PYTT13_RS01100 (PYTT13_01100) | dtd | 222917..223366 (+) | 450 | WP_099647958.1 | D-aminoacyl-tRNA deacylase | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17573.26 Da Isoelectric Point: 5.9743
>NTDB_id=253517 PYTT13_RS01070 WP_099647955.1 218694..219182(+) (ssb) [Paracoccus yeei strain TT13]
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDDGYGYEGGSSGGGSGRSPSPASRPDFDDEI
PF
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDDGYGYEGGSSGGGSGRSPSPASRPDFDDEI
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=253517 PYTT13_RS01070 WP_099647955.1 218694..219182(+) (ssb) [Paracoccus yeei strain TT13]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATCGCAACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGTTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGCGGTGATGACGGCTATG
GCTACGAAGGCGGCTCCTCGGGCGGCGGCTCGGGCCGCAGCCCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATC
CCGTTCTGA
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATCGCAACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGTTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGCGGTGATGACGGCTATG
GCTACGAAGGCGGCTCCTCGGGCGGCGGCTCGGGCCGCAGCCCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATC
CCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
46.809 |
100 |
0.543 |
| ssb | Vibrio cholerae strain A1552 |
50.867 |
100 |
0.543 |
| ssb | Neisseria gonorrhoeae MS11 |
41.341 |
100 |
0.457 |
| ssb | Neisseria meningitidis MC58 |
41.341 |
100 |
0.457 |