Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A388_RS03130 Genome accession   NZ_CP024418
Coordinates   605013..605366 (-) Length   117 a.a.
NCBI ID   WP_059262579.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A388     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 600013..610366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A388_RS03100 (A388_00588) queA 601164..602201 (-) 1038 WP_001177136.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  A388_RS03110 (A388_00590) - 602647..603714 (+) 1068 WP_059262584.1 tyrosine-type recombinase/integrase -
  A388_RS03115 (A388_00591) - 603742..604038 (-) 297 WP_000218943.1 hypothetical protein -
  A388_RS03120 (A388_00592) - 604035..604256 (-) 222 WP_059262583.1 hypothetical protein -
  A388_RS03125 (A388_00593) - 604266..605003 (-) 738 WP_059262581.1 3'-5' exonuclease -
  A388_RS03130 (A388_00594) ssb 605013..605366 (-) 354 WP_059262579.1 single-stranded DNA-binding protein Machinery gene
  A388_RS03135 (A388_00595) - 605354..605671 (-) 318 WP_000049862.1 hypothetical protein -
  A388_RS03140 (A388_00596) - 605675..606193 (-) 519 WP_005136254.1 hypothetical protein -
  A388_RS03145 (A388_00597) - 606196..606627 (-) 432 WP_001178667.1 DUF2528 family protein -
  A388_RS03150 (A388_00598) - 606695..607030 (-) 336 WP_057097136.1 hypothetical protein -
  A388_RS03155 (A388_00599) - 607027..609765 (-) 2739 WP_059262576.1 toprim domain-containing protein -
  A388_RS03160 (A388_00600) - 609859..610050 (-) 192 WP_032040900.1 hypothetical protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13290.99 Da        Isoelectric Point: 9.4650

>NTDB_id=253481 A388_RS03130 WP_059262579.1 605013..605366(-) (ssb) [Acinetobacter baumannii strain A388]
MRGINKVILVGVLGANPIPKQFQNGGSYAQFSIATSEKYQDKQTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQSLDSLPQANPV

Nucleotide


Download         Length: 354 bp        

>NTDB_id=253481 A388_RS03130 WP_059262579.1 605013..605366(-) (ssb) [Acinetobacter baumannii strain A388]
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTGCTTGGTGCCAATCCAATTCCTAAACAGTTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACAAACTGGTGACTGGATTGAAAATACAGAGTGGC
ATCGTATTGTTGCCCACAACAGACTAGGAGAAATTGCCTGCCAATTTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTACGTAACTGAAGTTAGAGCCATTACTTTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.364

94.017

0.53
  ssb Vibrio cholerae strain A1552

55.556

84.615

0.47
  ssb Neisseria gonorrhoeae MS11

40.952

89.744

0.368
  ssb Neisseria meningitidis MC58

40.952

89.744

0.368

Multiple sequence alignment