Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CRH16_RS05500 | Genome accession | NZ_CP024412 |
| Coordinates | 1014487..1015005 (-) | Length | 172 a.a. |
| NCBI ID | WP_075605585.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SH0104 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1009487..1020005
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRH16_RS05470 | argF | 1009673..1010683 (-) | 1011 | WP_005712612.1 | ornithine carbamoyltransferase | - |
| CRH16_RS05475 | - | 1010832..1011110 (+) | 279 | WP_012621703.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CRH16_RS05480 | - | 1011121..1011393 (+) | 273 | WP_005712616.1 | HigA family addiction module antitoxin | - |
| CRH16_RS05485 | rhlB | 1011457..1012677 (+) | 1221 | WP_005712618.1 | ATP-dependent RNA helicase RhlB | - |
| CRH16_RS05490 | - | 1012687..1012995 (+) | 309 | Protein_1033 | helicase HerA-like domain-containing protein | - |
| CRH16_RS05495 | - | 1013067..1014281 (-) | 1215 | WP_112062944.1 | ATP-binding protein | - |
| CRH16_RS05500 | ssb | 1014487..1015005 (-) | 519 | WP_075605585.1 | single-stranded DNA-binding protein | Machinery gene |
| CRH16_RS05505 | - | 1015280..1016251 (+) | 972 | WP_112062742.1 | IS110 family transposase | - |
| CRH16_RS05510 | uvrA | 1016470..1019298 (+) | 2829 | WP_112062945.1 | excinuclease ABC subunit UvrA | - |
| CRH16_RS05515 | - | 1019383..1019766 (+) | 384 | WP_005714445.1 | YacL family protein | - |
| CRH16_RS05520 | - | 1019732..1019983 (+) | 252 | WP_041603108.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19245.11 Da Isoelectric Point: 4.8252
>NTDB_id=253409 CRH16_RS05500 WP_075605585.1 1014487..1015005(-) (ssb) [Glaesserella parasuis strain SH0104]
MAGVNKVIIVGNLGNAPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTPTDYNQDGYTDSYDQNNNVNGGNATRPRPTPKPAAQAE
PPMDNFDDDIPF
MAGVNKVIIVGNLGNAPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTPTDYNQDGYTDSYDQNNNVNGGNATRPRPTPKPAAQAE
PPMDNFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=253409 CRH16_RS05500 WP_075605585.1 1014487..1015005(-) (ssb) [Glaesserella parasuis strain SH0104]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGCCCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAAGTCACTGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGCTCAAAAGTCTATGTAGAAGGC
AAACTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTGCTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACCAACCGACTACAATCAAGACGGCTACACCGACA
GCTATGATCAAAATAACAACGTCAACGGAGGCAACGCAACCAGACCTCGACCAACCCCAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGCCCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAAGTCACTGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGCTCAAAAGTCTATGTAGAAGGC
AAACTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTGCTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACCAACCGACTACAATCAAGACGGCTACACCGACA
GCTATGATCAAAATAACAACGTCAACGGAGGCAACGCAACCAGACCTCGACCAACCCCAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
88.333 |
100 |
0.924 |
| ssb | Vibrio cholerae strain A1552 |
51.412 |
100 |
0.529 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.442 |
| ssb | Neisseria meningitidis MC58 |
41.618 |
100 |
0.419 |