Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NXC24_RS09530 Genome accession   NZ_CP024311
Coordinates   1940127..1940687 (+) Length   186 a.a.
NCBI ID   WP_104823056.1    Uniprot ID   -
Organism   Rhizobium sp. NXC24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1935127..1945687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXC24_RS09520 (NXC24_CH01908) - 1935963..1936769 (-) 807 WP_104823054.1 DUF72 domain-containing protein -
  NXC24_RS09525 (NXC24_CH01909) uvrA 1936903..1939824 (-) 2922 WP_104823055.1 excinuclease ABC subunit UvrA -
  NXC24_RS09530 (NXC24_CH01910) ssb 1940127..1940687 (+) 561 WP_104823056.1 single-stranded DNA-binding protein Machinery gene
  NXC24_RS09535 (NXC24_CH01911) - 1940763..1941395 (-) 633 WP_104823057.1 MarC family protein -
  NXC24_RS09540 (NXC24_CH01912) gyrA 1941621..1944425 (+) 2805 WP_104823058.1 DNA gyrase subunit A -
  NXC24_RS09545 - 1944542..1944727 (-) 186 Protein_1875 hypothetical protein -
  NXC24_RS09550 (NXC24_CH01913) - 1945094..1945360 (-) 267 WP_104823059.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19667.38 Da        Isoelectric Point: 5.3534

>NTDB_id=253372 NXC24_RS09530 WP_104823056.1 1940127..1940687(+) (ssb) [Rhizobium sp. NXC24]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLNIATSETWRDRNSGERREKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWQDQNGQDRYSTEIVLQGFNSTLTMLDGRGEGGGAVEGGRGGRGGGDFGGGYGGDYGGDDYGQPSSQSSGRG
ASGGRGGAASGGGSNFSRDLDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=253372 NXC24_RS09530 WP_104823056.1 1940127..1940687(+) (ssb) [Rhizobium sp. NXC24]
ATGGCCGGTAGTGTGAACAAGGTAATTCTGGTTGGAAATCTCGGGGCGGACCCGGAAATCCGCCGTACGCAGGACGGCCG
TCCGATCGCCAACCTCAACATCGCGACGTCGGAAACCTGGCGCGACCGCAATTCCGGCGAGCGCCGGGAAAAGACGGAAT
GGCACCGCGTCGTGATCTTCAATGAAGGTCTCTGCAAGGTTGCCGAACAATATTTGAAGAAGGGCGCCAAGGTCTATATC
GAGGGCGCACTTCAGACGCGTAAATGGCAGGATCAGAACGGCCAGGATCGTTATTCGACCGAAATCGTGTTGCAGGGCTT
CAATTCGACGCTGACCATGCTGGATGGCCGTGGCGAAGGCGGCGGCGCTGTCGAAGGCGGTCGGGGTGGACGCGGCGGCG
GTGACTTTGGCGGTGGTTATGGTGGCGACTATGGTGGTGACGACTACGGCCAGCCCTCGTCGCAATCGTCGGGCCGTGGC
GCCAGCGGTGGCCGTGGCGGCGCCGCAAGCGGCGGCGGCAGCAACTTCTCGCGCGATCTGGACGACGATATTCCGTTTTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

97.849

0.489
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.489
  ssb Neisseria meningitidis MC58

38.743

100

0.398
  ssb Neisseria gonorrhoeae MS11

38.743

100

0.398

Multiple sequence alignment