Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCF14_RS05355 Genome accession   NZ_CP024282
Coordinates   1045433..1045969 (-) Length   178 a.a.
NCBI ID   WP_000168310.1    Uniprot ID   A0A7U8WHF9
Organism   Escherichia albertii strain 2014C-4356     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1040433..1050969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCF14_RS05330 soxR 1041794..1042258 (-) 465 WP_000412439.1 redox-sensitive transcriptional activator SoxR -
  CCF14_RS05335 soxS 1042344..1042667 (+) 324 WP_000019352.1 superoxide response transcriptional regulator SoxS -
  CCF14_RS05340 - 1042670..1044256 (-) 1587 WP_000019704.1 EAL domain-containing protein -
  CCF14_RS05350 - 1044704..1044985 (+) 282 WP_010338933.1 YjcB family protein -
  CCF14_RS05355 ssb 1045433..1045969 (-) 537 WP_000168310.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CCF14_RS05360 uvrA 1046222..1049044 (+) 2823 WP_059253973.1 excinuclease ABC subunit UvrA -
  CCF14_RS05365 - 1049078..1049434 (-) 357 WP_044710659.1 MmcQ/YjbR family DNA-binding protein -
  CCF14_RS05370 - 1049439..1049855 (-) 417 WP_000270382.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CCF14_RS05375 aphA 1049966..1050679 (-) 714 WP_001226934.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=253321 CCF14_RS05355 WP_000168310.1 1045433..1045969(-) (ssb) [Escherichia albertii strain 2014C-4356]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQSGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=253321 CCF14_RS05355 WP_000168310.1 1045433..1045969(-) (ssb) [Escherichia albertii strain 2014C-4356]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCAGCGAATATCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCCAGGATCGCTACACGACAGAAGTTGTCGTAAACGTCGG
CGGCACTATGCAGATGTTGGGGGGGCGTCAGAGTGGTGGCGCTCCGGCTGGCGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAACCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8WHF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

58.47

100

0.601
  ssb Neisseria meningitidis MC58

48.619

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.494

Multiple sequence alignment