Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCV27_RS15910 Genome accession   NZ_CP024269
Coordinates   3154132..3154668 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain F8111-1SC3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3149132..3159668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCV27_RS15890 aphA 3149420..3150133 (+) 714 WP_024171594.1 acid phosphatase AphA -
  CCV27_RS15895 yjbQ 3150244..3150660 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CCV27_RS15900 yjbR 3150664..3151020 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CCV27_RS15905 uvrA 3151055..3153877 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  CCV27_RS15910 ssb 3154132..3154668 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CCV27_RS15915 yjcB 3154767..3155048 (-) 282 WP_001295689.1 YjcB family protein -
  CCV27_RS15925 pdeC 3155478..3157064 (+) 1587 WP_001719291.1 c-di-GMP phosphodiesterase PdeC -
  CCV27_RS15930 soxS 3157067..3157390 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  CCV27_RS15935 soxR 3157476..3157940 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=253248 CCV27_RS15910 WP_000168305.1 3154132..3154668(+) (ssb) [Escherichia coli strain F8111-1SC3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=253248 CCV27_RS15910 WP_000168305.1 3154132..3154668(+) (ssb) [Escherichia coli strain F8111-1SC3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCTCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment