Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCV27_RS11400 Genome accession   NZ_CP024269
Coordinates   2227393..2228517 (-) Length   374 a.a.
NCBI ID   WP_001613939.1    Uniprot ID   -
Organism   Escherichia coli strain F8111-1SC3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2222393..2233517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCV27_RS11370 yrdA 2224193..2224747 (+) 555 WP_001613937.1 gamma carbonic anhydrase family protein -
  CCV27_RS11375 yrdB 2224723..2224980 (-) 258 WP_001070590.1 DUF1488 domain-containing protein -
  CCV27_RS11380 aroE 2224977..2225795 (-) 819 WP_001613938.1 shikimate dehydrogenase -
  CCV27_RS11385 tsaC 2225800..2226372 (-) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  CCV27_RS11390 yrdD 2226377..2226919 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  CCV27_RS11395 smg 2226948..2227421 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  CCV27_RS11400 dprA 2227393..2228517 (-) 1125 WP_001613939.1 DNA-protecting protein DprA Machinery gene
  CCV27_RS11405 def 2228647..2229156 (+) 510 WP_000114984.1 peptide deformylase -
  CCV27_RS11410 fmt 2229171..2230118 (+) 948 WP_001613940.1 methionyl-tRNA formyltransferase -
  CCV27_RS11415 rsmB 2230164..2231453 (+) 1290 WP_001613941.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CCV27_RS11420 trkA 2231475..2232851 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  CCV27_RS11425 mscL 2232981..2233391 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41001.98 Da        Isoelectric Point: 6.4458

>NTDB_id=253240 CCV27_RS11400 WP_001613939.1 2227393..2228517(-) (dprA) [Escherichia coli strain F8111-1SC3]
MVDTEIWLRLMSVSSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLAKHGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=253240 CCV27_RS11400 WP_001613939.1 2227393..2228517(-) (dprA) [Escherichia coli strain F8111-1SC3]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCGTCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGAAGCATGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCTGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAACGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCACTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCTTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Glaesserella parasuis strain SC1401

45.401

90.107

0.409
  dprA Haemophilus influenzae Rd KW20

45.401

90.107

0.409
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Legionella pneumophila strain ERS1305867

44.545

88.235

0.393

Multiple sequence alignment