Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DF184_RS00360 Genome accession   NZ_CP029398
Coordinates   61207..61797 (+) Length   196 a.a.
NCBI ID   WP_109371013.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56207..66797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS00350 (DF184_00350) - 57590..59113 (+) 1524 WP_044692551.1 quinol oxidase -
  DF184_RS00355 (DF184_00355) hexB 59231..61168 (+) 1938 WP_029172056.1 DNA mismatch repair endonuclease MutL Machinery gene
  DF184_RS00360 (DF184_00360) ruvA 61207..61797 (+) 591 WP_109371013.1 Holliday junction branch migration protein RuvA Machinery gene
  DF184_RS00365 (DF184_00365) - 62162..62731 (+) 570 WP_024398416.1 DNA-3-methyladenine glycosylase I -
  DF184_RS00370 (DF184_00370) cinA 62768..63949 (+) 1182 WP_109371015.1 competence/damage-inducible protein A Machinery gene
  DF184_RS00375 (DF184_00375) recA 64001..65152 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DF184_RS00380 (DF184_00380) spx 65387..65785 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DF184_RS00385 (DF184_00385) - 65885..66151 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DF184_RS00390 (DF184_00390) ruvX 66151..66570 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21735.11 Da        Isoelectric Point: 5.3356

>NTDB_id=253123 DF184_RS00360 WP_109371013.1 61207..61797(+) (ruvA) [Streptococcus suis strain HN105]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=253123 DF184_RS00360 WP_109371013.1 61207..61797(+) (ruvA) [Streptococcus suis strain HN105]
ATGTACGACTATATCAAAGGAATTTTAACGAAAATAACTGCAAAATATATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAACCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGAATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTCGATGATAATGATGGACTTGTTCGTGCCATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCTGGTCCTGTCCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCTATGGAGGCTATGGAA
GCCCTTGGTTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAATTACAT
CAAGTCAGCCCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.65

100

0.77
  ruvA Streptococcus pneumoniae D39

76.65

100

0.77
  ruvA Streptococcus pneumoniae TIGR4

76.65

100

0.77
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408