Detailed information NTG0253120

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DF184_RS00310
• Genome accession: NZ_CP029398
• Coordinates: 50936..51937 (+)
• Length: 333 a.a.
• NCBI ID: WP_024402117.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HN105
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 45936..56937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DF184_RS00290 (DF184_00290)	-	46626..47450 (+)	825	WP_024402120.1	ABC transporter ATP-binding protein	-
DF184_RS00295 (DF184_00295)	-	47443..48186 (+)	744	WP_024399965.1	ABC transporter permease	-
DF184_RS00300 (DF184_00300)	-	48512..49240 (+)	729	WP_052501738.1	hypothetical protein	-
DF184_RS11075	-	49266..49460 (+)	195	Protein_40	ATP-binding cassette domain-containing protein	-
DF184_RS00305 (DF184_00305)	-	49503..50366 (+)	864	Protein_41	ABC transporter ATP-binding protein	-
DF184_RS11000	-	50468..50641 (+)	174	WP_014735240.1	hypothetical protein	-
DF184_RS00310 (DF184_00310)	ruvB	50936..51937 (+)	1002	WP_024402117.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DF184_RS00315 (DF184_00315)	-	51937..52683 (+)	747	WP_024402116.1	GNAT family N-acetyltransferase	-
DF184_RS00320 (DF184_00320)	-	52685..53320 (+)	636	WP_024402115.1	HAD-IA family hydrolase	-
DF184_RS00325 (DF184_00325)	comR	53567..54466 (+)	900	WP_012774888.1	helix-turn-helix domain-containing protein	Regulator
DF184_RS00335 (DF184_00335)	-	55102..56040 (-)	939	WP_024402114.1	IS4 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37609.11 Da
• Isoelectric Point: 4.4673

>NTDB_id=253120 DF184_RS00310 WP_024402117.1 50936..51937(+) (ruvB) [Streptococcus suis strain HN105]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLIRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=253120 DF184_RS00310 WP_024402117.1 50936..51937(+) (ruvB) [Streptococcus suis strain HN105]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCACAGAAATTAAA
TGAGTACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCTTTTGTCATTGCCAACGAACTAGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCTGGGGAAGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCTCGTTTTGGTATTACCGGCCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCAGCGATCGAGCTGGCTCGTCGTT
CCCGTGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGGGTGAGGGATTTCGCACAGATTATGGGCGATGGTCTGATT
GATGATACCATTACGGACAAGGCCCTAACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTTAATATCGCTGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAGCCCTACCTGATTCAGCAGGGCTTCCTCATACGGACACGGACGGGGCGGGTTGCTACAGCC
AAGGCTTACGAACACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474