Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CS376_RS21190 Genome accession   NZ_CP024203
Coordinates   4180210..4180728 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain NKG-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4180210..4189982 4180210..4180728 within 0


Gene organization within MGE regions


Location: 4180210..4189982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS21190 ssbA 4180210..4180728 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  CS376_RS21195 rpsF 4180768..4181055 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  CS376_RS21200 ychF 4181167..4182267 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  CS376_RS21205 - 4182394..4184397 (-) 2004 WP_099567253.1 molybdopterin-dependent oxidoreductase -
  CS376_RS21210 - 4184444..4184650 (-) 207 WP_012118942.1 DUF951 domain-containing protein -
  CS376_RS21215 - 4184736..4185761 (-) 1026 WP_088005468.1 hypothetical protein -
  CS376_RS21220 - 4185863..4186408 (+) 546 WP_223252767.1 GNAT family N-acetyltransferase -
  CS376_RS21225 yyaC 4186583..4187197 (+) 615 WP_004392969.1 spore protease YyaC -
  CS376_RS21230 - 4187227..4188078 (-) 852 WP_012118944.1 ParB/RepB/Spo0J family partition protein -
  CS376_RS21235 soj 4188071..4188832 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  CS376_RS21240 noc 4189131..4189982 (-) 852 WP_007409900.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=252941 CS376_RS21190 WP_004392979.1 4180210..4180728(-) (ssbA) [Bacillus velezensis strain NKG-1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=252941 CS376_RS21190 WP_004392979.1 4180210..4180728(-) (ssbA) [Bacillus velezensis strain NKG-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment