Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DIW83_RS02010 Genome accession   NZ_CP029351
Coordinates   420195..422240 (-) Length   681 a.a.
NCBI ID   WP_016804172.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415195..427240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS01975 (DIW83_01975) - 415672..416355 (+) 684 WP_016804171.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DIW83_RS01980 (DIW83_01980) - 416382..417023 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  DIW83_RS01985 (DIW83_01985) - 417035..417322 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  DIW83_RS01990 (DIW83_01990) - 417396..418409 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  DIW83_RS01995 (DIW83_01995) - 418567..419148 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  DIW83_RS02000 (DIW83_02000) - 419163..419564 (+) 402 WP_004884602.1 NUDIX hydrolase -
  DIW83_RS02005 (DIW83_02005) comF 419567..420202 (-) 636 WP_004884597.1 ComF family protein Machinery gene
  DIW83_RS02010 (DIW83_02010) recG 420195..422240 (-) 2046 WP_016804172.1 ATP-dependent DNA helicase RecG Machinery gene
  DIW83_RS02015 (DIW83_02015) - 422261..423076 (+) 816 WP_016804173.1 NAD(P)H-binding protein -
  DIW83_RS02020 (DIW83_02020) - 423156..424142 (+) 987 WP_025465644.1 putative solute-binding protein -
  DIW83_RS02025 (DIW83_02025) plsB 424185..426758 (-) 2574 WP_016804175.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76488.11 Da        Isoelectric Point: 7.7108

>NTDB_id=252900 DIW83_RS02010 WP_016804172.1 420195..422240(-) (recG) [Acinetobacter nosocomialis strain NCTC 8102]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQPKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILIDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGITVAWLSGKQKGKARTQAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLNRIATNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=252900 DIW83_RS02010 WP_016804172.1 420195..422240(-) (recG) [Acinetobacter nosocomialis strain NCTC 8102]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTACTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGGTGGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGCGTAGGTGCAAGGGGACTTGAGCTTTATCATCCAGAAATTCAGCTCATTAATGAGCATACGC
CTCTACCCAAAACGCAGCTCACGGCAATTTACCCAAGTACTGATGGTTTAACGCAACCTAAGTTACGTGAATATGTTAAA
CAGGCGTTGAAGCATCATAGTGATGCTCTACCCGAGCTGCTTCCTAAACAATATACAAATGGATACGCACTCAAAGAAGC
CCTACATTACATTCATGAGCCACCTGTCGATGCCAATATGATTCAATTGGCCCAAGGGTCTCATCCTGCTCAGCAACGCC
TTATTTTTGAAGAGTTGGTCGCACATCAAATTAGTCTTCTCACACGACGTGCTTATATTCGTCAAATTGCCTCACCTGCT
TTCCCAAGCAGCAAAGTACTTGCGAAAAAACTGTTAGAAGCTCTTCCCTTTCAAATGACCAACGCACAAAAGCGTGTATC
AAAAGAAATTTTAATCGACTTAAAACAACACCAACCGATGTTACGCTTAGTACAAGGTGATGTAGGTGCAGGTAAAACTT
TAGTTGCAGCAGTTGCTGCATGTCACGCCTTAGAAGCAGATTGGCAAGTTGCCTTAATGGCACCTACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAGCGCTGGTTTGAACCTTTAGGTATTACAGTAGCTTGGCTGTCAGGCAAACAAAAAGG
TAAAGCACGAACACAAGCTGAACAACAAATCAAAGAAGGCCATGCCGAGCTTATTGTAGGTACGCATGCTTTGTTTCAAG
ATAATGTTGAGTTTGCCAAACTAGGACTCGTGATTATTGATGAGCAGCACCGCTTTGGGGTGGATCAACGATTAGCCTTA
CGCAACAAAGGCGCAGAACAACTCACACCACATCAACTCGTCATGACTGCTACGCCAATTCCTAGAACATTAGCAATGAG
TGCTTATGGCGATTTGGATACATCGATTATTGATGAATTGCCGCCAGGCCGAACTCCAATTCAGACCGTCACAATTCCGC
TAGATCGTCGTGAAGAAGTGCTAAATCGAATTGCTACAAATTGCCGAGAAGGTAAACAAGCCTACTGGGTATGTACTCTG
GTTGAACAGTCCGAAACTTTAGATGCTCAAGCTGCAGAAGCCACTTATCAAGAAATGAAAGAGCGCTTTCCTGAACTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCTGATGAAAAGCAATCTGTCATGCAAGCATTTAAAAACAATGAACTACAAC
TGCTAATTGCAACAACTGTTATTGAGGTTGGGGTAGATGTACCTAATGCCTCAATTATGGTCATTGAAAATGCTGAACGC
TTAGGTCTTTCACAACTACACCAATTACGAGGTCGAGTCGGACGAGGTGCAAAGGCTAGTTTTTGTGTTCTTCTCTATAA
ACCCCCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAACGACGGCTTTGTCATTGCTGAAAAAG
ACCTTGAATTACGAGGTCCGGGTGAATTATTAGGAACAAAACAGACAGGTGATATGGGCTTCCGTGTCGCACGTTTAGAA
CGAGATGATCATTTACTGAGTCAAGCGCATTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGACGCCCT
CTTGAAACGGTGGCTGCCTGAAGCACCTCGATACGCTTATGTTTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(262-422)

RecG wedge domain (RecG_wedge)

(7-163)

Helicase conserved C-terminal domain (Helicase_C)

(466-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.075

98.238

0.492
  recG/mmsA Streptococcus pneumoniae R6

41.353

97.651

0.404
  recG/mmsA Streptococcus pneumoniae R36A

41.353

97.651

0.404
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389

Multiple sequence alignment