Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CS376_RS07980 Genome accession   NZ_CP024203
Coordinates   1496788..1497072 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491788..1502072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS07955 - 1493031..1493939 (+) 909 WP_032871368.1 ketopantoate reductase family protein -
  CS376_RS07960 - 1493971..1495203 (-) 1233 WP_007409644.1 aminopeptidase -
  CS376_RS07965 - 1495304..1495438 (-) 135 WP_003154559.1 protein YkpC -
  CS376_RS07970 mreBH 1495510..1496517 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  CS376_RS07980 abrB 1496788..1497072 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CS376_RS07985 - 1497245..1498549 (+) 1305 WP_007409646.1 ATP-binding protein -
  CS376_RS07990 - 1498551..1499378 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  CS376_RS07995 ktrC 1499419..1500084 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CS376_RS08000 ade 1500232..1501965 (+) 1734 WP_099566714.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=252899 CS376_RS07980 WP_003154557.1 1496788..1497072(+) (abrB) [Bacillus velezensis strain NKG-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=252899 CS376_RS07980 WP_003154557.1 1496788..1497072(+) (abrB) [Bacillus velezensis strain NKG-1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATCGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment