Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B9S64_RS24180 Genome accession   NZ_CP029342
Coordinates   5324920..5326539 (+) Length   539 a.a.
NCBI ID   WP_103488712.1    Uniprot ID   -
Organism   Streptomyces sp. SM18     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5319920..5331539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS24145 (B9S64_24145) lepB 5320014..5320799 (+) 786 WP_103488716.1 signal peptidase I -
  B9S64_RS24150 (B9S64_24150) lepB 5320792..5321832 (+) 1041 WP_103488715.1 signal peptidase I -
  B9S64_RS24155 (B9S64_24155) lepB 5321759..5322706 (+) 948 WP_103488721.1 signal peptidase I -
  B9S64_RS24160 (B9S64_24160) lepB 5322758..5323522 (+) 765 WP_103488714.1 signal peptidase I -
  B9S64_RS24165 (B9S64_24165) - 5323512..5324000 (+) 489 WP_103488713.1 NUDIX hydrolase -
  B9S64_RS24170 (B9S64_24170) - 5324064..5324372 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  B9S64_RS24175 (B9S64_24175) - 5324561..5324920 (+) 360 WP_028443275.1 YraN family protein -
  B9S64_RS24180 (B9S64_24180) comM 5324920..5326539 (+) 1620 WP_103488712.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B9S64_RS24185 (B9S64_24185) dprA 5326536..5327711 (+) 1176 WP_103488711.1 DNA-processing protein DprA -
  B9S64_RS24190 (B9S64_24190) whiG 5327961..5328797 (+) 837 WP_028443278.1 RNA polymerase sigma factor WhiG -
  B9S64_RS24195 (B9S64_24195) - 5328893..5329447 (+) 555 WP_103488710.1 TetR/AcrR family transcriptional regulator -
  B9S64_RS24200 (B9S64_24200) - 5329743..5330468 (-) 726 Protein_4726 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 55088.44 Da        Isoelectric Point: 8.1935

>NTDB_id=252872 B9S64_RS24180 WP_103488712.1 5324920..5326539(+) (comM) [Streptomyces sp. SM18]
MGFARACSVALAGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACSVLGAAERIDPAAIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYRQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLGDEPVPDEPVADGGRPDPMLAGLMVPGAGIGTGLAAGGRGAGQQPDLADVVGQTRARKALEVAAAGGHHLLL
SGPPGAGKTMLAERLSGILPPLSRRESLEVTAVHSVAGILPPGEPLVTRAPYCAPHHSATMQSLVGGGNGLPRPGAVSLA
HRGILFLDEAPEFSGRALDALRQPLESGHVVIARAAGVVRLPAGFLLVLAANPCPCGRHTLTGAGCECPPSAVRRYQARL
SGPLLDRVDLRVEVEPVGRADLMGSGGRGESSAEVAARVRAARARAVERLAGTRWSANSQVPGHELRTRLTAAPGALMAA
ERDMERGLLTARGLDRVLRVAWTVADLRAADRPDASDIAVALELRTGIHRGALLKAGAS

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=252872 B9S64_RS24180 WP_103488712.1 5324920..5326539(+) (comM) [Streptomyces sp. SM18]
ATGGGGTTCGCGCGGGCGTGTTCGGTGGCGCTGGCGGGCGTCGAAGGCGTGGTGGTGGAGGTCCAGGCGGATCTGGAGCC
GGGTGTGGCGGCGTTCACCCTGGTCGGGCTGCCGGACAAGAGCCTGGTGGAGAGCCGCGACCGGGTCAGGGCCGCGGTGG
TGAACTCGGGGGCCGAGTGGCCCCAGAAGAAGCTGACGGTGGGGCTGTCGCCCGCCTCCGTACCCAAGAGCGGTTCGGGT
TTCGATCTCGCCGTGGCGTGCTCGGTGCTGGGCGCCGCGGAGCGGATCGACCCGGCCGCCATCGCTGATGTGGTGATGAT
CGGGGAGCTGGGACTGGACGGCCGGGTGCGCCCGGTGCGCGGTGTCCTGCCGGCGGTCCTGGCGGCGGCGGAGGCGGGGT
ACCGCCAGGTGGTGGTGCCGGAGCAGACCGCCGGGGAGGCCGCCCTGGTACCGGGCGTCTCCGTCCTCGGGGTGCGGAGC
CTGCGGCAGCTGATCGCGGTGCTCGGCGACGAGCCGGTGCCGGACGAGCCCGTGGCCGACGGGGGACGCCCCGACCCCAT
GCTGGCCGGGCTGATGGTGCCGGGCGCGGGCATCGGCACGGGACTGGCGGCGGGCGGCCGGGGCGCGGGGCAGCAGCCCG
ACCTGGCGGACGTCGTCGGCCAGACCAGGGCGCGCAAGGCGCTGGAGGTCGCCGCGGCCGGCGGGCACCATCTGCTGCTC
TCCGGCCCGCCGGGAGCGGGCAAGACCATGCTGGCCGAGCGGCTGAGCGGGATCCTGCCACCCCTGTCCCGGCGGGAATC
CCTCGAAGTGACGGCGGTGCACTCGGTGGCCGGGATCCTTCCCCCGGGCGAACCACTGGTCACCAGGGCGCCGTACTGCG
CGCCGCACCACTCAGCGACCATGCAGTCCCTGGTGGGCGGAGGCAACGGCCTGCCGCGCCCCGGAGCCGTCTCCCTGGCA
CACCGGGGGATCCTCTTCCTGGACGAGGCCCCCGAATTCTCCGGGCGCGCGCTGGACGCCCTGCGCCAGCCCCTGGAATC
CGGACACGTGGTGATCGCGCGCGCCGCCGGGGTGGTTCGGCTGCCCGCCGGCTTCCTGCTGGTGCTGGCCGCCAACCCCT
GCCCGTGCGGGCGGCACACGCTCACCGGCGCGGGCTGCGAATGCCCGCCCTCGGCCGTCCGCCGCTATCAGGCCCGGCTG
TCCGGGCCGCTGCTGGACCGGGTGGACCTCAGGGTCGAGGTGGAGCCCGTGGGCCGGGCGGACCTGATGGGGTCCGGCGG
CCGCGGCGAGTCCTCGGCCGAGGTCGCCGCGCGGGTGCGCGCGGCCAGGGCACGGGCCGTGGAGCGGCTGGCGGGCACGC
GATGGAGCGCCAACAGCCAGGTGCCGGGGCATGAGCTGCGGACCCGGCTGACCGCGGCACCGGGCGCCCTGATGGCGGCC
GAGCGGGACATGGAGCGGGGCCTGCTCACGGCACGGGGGCTGGACCGGGTGCTGCGGGTGGCGTGGACCGTGGCGGACCT
CCGGGCGGCCGACCGCCCGGACGCCTCCGACATCGCGGTGGCCCTGGAGCTGCGTACCGGGATCCACCGGGGGGCCCTGC
TCAAGGCCGGTGCGTCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-419)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.19

97.403

0.391
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.551

94.249

0.382
  comM Vibrio cholerae strain A1552

40.551

94.249

0.382
  comM Acinetobacter baylyi ADP1

38.941

98.145

0.382
  comM Haemophilus influenzae Rd KW20

38.593

97.588

0.377
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

38.388

96.66

0.371

Multiple sequence alignment