Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CS376_RS00250 Genome accession   NZ_CP024203
Coordinates   45547..45837 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40547..50837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS00210 darA 40564..40893 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  CS376_RS00215 - 40906..41346 (+) 441 WP_004264730.1 YaaR family protein -
  CS376_RS00220 holB 41358..42347 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  CS376_RS00225 ricT 42350..43177 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  CS376_RS00230 yabA 43192..43551 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  CS376_RS00235 - 43612..44355 (+) 744 WP_015239018.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CS376_RS00240 - 44342..44641 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  CS376_RS00245 rsmI 44616..45497 (+) 882 WP_043020647.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CS376_RS00250 abrB 45547..45837 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  CS376_RS00255 metG 46321..48312 (+) 1992 WP_059366865.1 methionine--tRNA ligase -
  CS376_RS00260 - 48388..49155 (+) 768 WP_059366867.1 TatD family hydrolase -
  CS376_RS00265 - 49290..50615 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=252872 CS376_RS00250 WP_169510469.1 45547..45837(-) (abrB) [Bacillus velezensis strain NKG-1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=252872 CS376_RS00250 WP_169510469.1 45547..45837(-) (abrB) [Bacillus velezensis strain NKG-1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATTATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment