Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL2594_RS00190 Genome accession   NC_007722
Coordinates   49127..49657 (+) Length   176 a.a.
NCBI ID   WP_011413009.1    Uniprot ID   Q2NDW0
Organism   Erythrobacter litoralis HTCC2594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 44127..54657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL2594_RS15555 (ELI_00165) - 44563..45006 (-) 444 WP_011413003.1 YcgN family cysteine cluster protein -
  EL2594_RS15560 (ELI_00170) - 44994..45587 (-) 594 WP_011413004.1 SCO family protein -
  EL2594_RS00170 (ELI_00175) - 45673..46293 (+) 621 WP_049762405.1 ankyrin repeat domain-containing protein -
  EL2594_RS00175 (ELI_00180) - 46298..46960 (+) 663 WP_011413006.1 COQ9 family protein -
  EL2594_RS00180 (ELI_00185) - 47020..47259 (+) 240 WP_011413007.1 FeoA family protein -
  EL2594_RS00185 (ELI_00190) feoB 47273..49111 (+) 1839 WP_011413008.1 ferrous iron transporter B -
  EL2594_RS00190 (ELI_00195) ssb 49127..49657 (+) 531 WP_011413009.1 single-stranded DNA-binding protein Machinery gene
  EL2594_RS00195 (ELI_00200) - 49684..50208 (-) 525 WP_011413010.1 YceD family protein -
  EL2594_RS00200 (ELI_00205) - 50205..50723 (-) 519 WP_011413011.1 ubiquinol-cytochrome C chaperone family protein -
  EL2594_RS00205 (ELI_00210) - 50980..51408 (+) 429 WP_011413012.1 outer membrane protein assembly factor BamE -
  EL2594_RS00210 (ELI_00215) hslV 51465..52022 (+) 558 WP_011413013.1 ATP-dependent protease subunit HslV -
  EL2594_RS00215 (ELI_00220) hslU 52117..53418 (+) 1302 WP_011413014.1 ATP-dependent protease ATPase subunit HslU -
  EL2594_RS00220 (ELI_00225) - 53415..53825 (+) 411 WP_011413015.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18257.69 Da        Isoelectric Point: 4.9561

>NTDB_id=25279 EL2594_RS00190 WP_011413009.1 49127..49657(+) (ssb) [Erythrobacter litoralis HTCC2594]
MAGSLNKVMLIGNLGQDPEVRSFQNGGKVCNLRIATSETWKDRNSGERQERTEWHTVAIFSEGLVNVAERYLKKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLRGYNGTLTMLDGAGGGQGGGGGGGYGGGGQRSGGNNGGWDQGGGGQSGGQSGGGSG
GGGGSNYDDLDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=25279 EL2594_RS00190 WP_011413009.1 49127..49657(+) (ssb) [Erythrobacter litoralis HTCC2594]
ATGGCGGGCTCGCTCAACAAGGTCATGCTGATCGGCAATCTGGGGCAGGACCCGGAAGTGCGCAGCTTCCAGAATGGCGG
CAAAGTCTGCAACCTGCGCATCGCCACCAGCGAGACGTGGAAGGATCGCAATAGCGGCGAGCGGCAGGAGCGCACCGAAT
GGCACACGGTCGCGATCTTTTCAGAAGGTCTCGTCAACGTCGCGGAGCGCTATCTCAAGAAAGGCTCCAAGGTTTACATC
GAAGGCCAGTTGCAGACTCGCAAGTGGCAGGACCAGAGCGGCAATGACCGCTATTCGACCGAAGTCGTGCTGCGCGGCTA
TAACGGCACGCTGACCATGCTCGACGGTGCCGGTGGCGGCCAAGGCGGTGGTGGCGGCGGAGGCTACGGTGGCGGTGGCC
AGCGCTCGGGCGGGAACAATGGCGGCTGGGATCAGGGCGGTGGTGGCCAAAGTGGCGGCCAGAGCGGCGGTGGCTCCGGC
GGCGGAGGCGGCTCGAACTACGACGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2NDW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.685

100

0.523
  ssb Glaesserella parasuis strain SC1401

43.548

100

0.46
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.409
  ssb Neisseria meningitidis MC58

40.223

100

0.409

Multiple sequence alignment