Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   YHS_RS02865 Genome accession   NZ_CP024176
Coordinates   645466..646518 (+) Length   350 a.a.
NCBI ID   WP_099833605.1    Uniprot ID   A0AAD0EWP1
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640466..651518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS02855 (YHS_02860) - 641941..642459 (+) 519 WP_007116392.1 DUF6586 family protein -
  YHS_RS02860 (YHS_02865) - 642535..645264 (-) 2730 WP_099833604.1 penicillin-binding protein 1A -
  YHS_RS02865 (YHS_02870) pilM 645466..646518 (+) 1053 WP_099833605.1 pilus assembly protein PilM Machinery gene
  YHS_RS02870 (YHS_02875) - 646518..647189 (+) 672 WP_099833606.1 PilN domain-containing protein -
  YHS_RS02875 (YHS_02880) - 647192..647950 (+) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO -
  YHS_RS02880 (YHS_02885) - 647940..648473 (+) 534 WP_099833607.1 pilus assembly protein PilP -
  YHS_RS02885 (YHS_02890) pilQ 648491..650839 (+) 2349 WP_099833608.1 type IV pilus secretin family protein -
  YHS_RS02890 (YHS_02895) - 650947..651483 (+) 537 WP_062334134.1 shikimate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38350.74 Da        Isoelectric Point: 4.5213

>NTDB_id=252778 YHS_RS02865 WP_099833605.1 645466..646518(+) (pilM) [Moraxella osloensis strain YHS]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIEAVSDALARLSRSRGFSSKNIATA
VAGSSVISKIIEMEADLTELERESLIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVESYAVERAFQLMVDSLPGQPQHIALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQNRYGLTFEEAM
INKRTLSLPDDYYTDVLLPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=252778 YHS_RS02865 WP_099833605.1 645466..646518(+) (pilM) [Moraxella osloensis strain YHS]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACCACCACTGCGATCAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCTCGCGGTGCTGTTGTTGATAAAAATATTG
TAGATATTGAAGCGGTCAGTGACGCCCTCGCAAGATTATCTCGTAGCAGAGGTTTTTCCAGCAAAAATATTGCGACAGCC
GTAGCAGGCTCTTCGGTTATTAGCAAAATCATTGAGATGGAAGCGGATCTCACAGAGCTTGAACGAGAATCTCTTATACG
TCTAGATGCTGATCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATTGGCCCTTCAGCTACGC
CTGATATGTGTAAGGTATTATTAGTTGCCTCTCGCACTGAAAACGTTGACCAACGTGTCGACGCGGGTGCTTTGGCGGGG
CTGGATACTAAAATTGTGGATGTGGAGTCTTACGCAGTTGAACGCGCCTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATATAGCCCTTATTGATATCGGGCACAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTATACA
GCCGTGAACAGCTTTTTGGCGGTGCCCAGTTAACTGAAAGTATTCAAAATCGTTATGGTTTGACGTTCGAGGAGGCTATG
ATTAATAAGCGCACCCTGTCATTGCCAGATGATTACTATACGGATGTGTTACTGCCATTTTTAGATGCCATTGTGCAGCA
AATTACCCGCTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGACTATATTTTGTTGGGTGGTGGTAGTG
CCAGCATTGCGGGTCTAGCGAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCAGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.137

100

0.523
  comM Acinetobacter nosocomialis M2

51.852

100

0.52
  comM Acinetobacter baylyi ADP1

49.003

100

0.491
  pilM Legionella pneumophila strain ERS1305867

43.059

100

0.434

Multiple sequence alignment