Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CSW01_RS02110 | Genome accession | NZ_CP024162 |
| Coordinates | 421355..421888 (+) | Length | 177 a.a. |
| NCBI ID | WP_000168289.1 | Uniprot ID | Q9KUW2 |
| Organism | Vibrio cholerae strain E7946 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 416355..426888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSW01_RS02095 (CSW01_02080) | uvrA | 416396..419218 (-) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
| CSW01_RS02100 (CSW01_02085) | galU | 419374..420246 (-) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| CSW01_RS02105 (CSW01_02090) | qstR | 420419..421063 (-) | 645 | WP_001188316.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| CSW01_RS02110 (CSW01_02095) | ssb | 421355..421888 (+) | 534 | WP_000168289.1 | single-stranded DNA-binding protein | Machinery gene |
| CSW01_RS02115 (CSW01_02100) | csrD | 422012..424024 (+) | 2013 | WP_001918202.1 | RNase E specificity factor CsrD | - |
| CSW01_RS02120 (CSW01_02105) | - | 424037..425476 (+) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| CSW01_RS02125 (CSW01_02110) | gspM | 425473..426123 (+) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| CSW01_RS02130 (CSW01_02115) | - | 426116..426433 (+) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19672.90 Da Isoelectric Point: 5.7626
>NTDB_id=252604 CSW01_RS02110 WP_000168289.1 421355..421888(+) (ssb) [Vibrio cholerae strain E7946]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=252604 CSW01_RS02110 WP_000168289.1 421355..421888(+) (ssb) [Vibrio cholerae strain E7946]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| ssb | Glaesserella parasuis strain SC1401 |
50.265 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |